Exiguobacterium indicum sp. nov., a psychrophilic bacterium from the Hamta glacier of the Himalayan mountain ranges of India

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 12, 2006, Pages 2765-2770

  Chaturvedi, Preeti ^a   Shivaji, S ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACITRACIN; BACTERIAL DNA; CARBENICILLIN; CEFAZOLIN; CEFOTAXIME; CHLORAMPHENICOL; CIPROFLOXACIN; CLINDAMYCIN; COTRIMOXAZOLE; DOXYCYCLINE; ERYTHROMYCIN; GENTAMICIN; KANAMYCIN; LINCOMYCIN; LOMEFLOXACIN; NORFLOXACIN; NOVOBIOCIN; OLEANDOMYCIN; POLYMYXIN B; RIFAMPICIN; RNA 16S; ROXITHROMYCIN; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHOXAZOLE; TETRACYCLINE; TOBRAMYCIN; UNINDEXED DRUG;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENETICS; BACTERIAL KINETICS; BACTERIAL STRAIN; BACTERIUM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; EXIGUOBACTERIUM ACETYLICUM; EXIGUOBACTERIUM ANTARCTICUM; EXIGUOBACTERIUM INDICUM; EXIGUOBACTERIUM OXIDOTOLERANS; EXIGUOBACTERIUM UNDAE; GENE SEQUENCE; GLACIER; GRAM POSITIVE BACTERIUM; INDIA; MORPHOLOGICAL TRAIT; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; COLD; DNA, BACTERIAL; DNA, RIBOSOMAL; ICE COVER; INDIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); EXIGUOBACTERIUM; EXIGUOBACTERIUM ACETYLICUM; EXIGUOBACTERIUM ANTARCTICUM; EXIGUOBACTERIUM OXIDOTOLERANS; EXIGUOBACTERIUM UNDAE; POSIBACTERIA;

EID: 33845761448     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64508-0     Document Type: Article

References (29)

1. Chaturvedi, P., Reddy, G. S. N. & Shivaji, S. (2005). Dyadobacter hamtensis sp. nov., from Hamta glacier, Himalayas, India. Int J Syst Evol Microbiol 55, 2113-2117.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Collins, M. D., Lund, B. M., Farrow, J. A. E. & Schleifer, K. H. (1983). Chemotaxonomic study of an alkalophilic bacterium Exiguo-bacterium aurantiacum gen. nov., sp. nov. J Gen Microbial 129, 2037-2042.
4. Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1994). Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia and Planococcus. Int J Syst Bacteriol 44, 74-82.
5. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
6. Fruhling, A., Schumann, P., Hippe, H., Straubler, B. & Stackebrandt, E. (2002). Exiguobacterium undae sp. nov. and Exiguobacterium antarcticum sp. nov. Int J Syst Evol Microbiol 52, 1171-1176.
7. Gee, J. M., Lund, B. M., Metcalf, G. & Peel, J. L. (1980). Properties of a new group of alkalophilic bacteria. J Gen Microbiol 117, 9-17.
8. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 66, 24-26.
9. Kim, I.-G., Lee, M.-H., Jung, S.-Y., Song, J. J., Oh, T.-K. & Yoon, J.-H. (2005). Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 885-889.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-206.
12. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
13. Lopez-Cortes, A., Schumann, P., Pukall, R. & Stackebrandt, E. (2006). Exiguobacterium mexicanum sp. nov. and Exiguobacterium artemiae sp. nov., isolated from the brine shrimp Artemia franciscana. Syst Appl Microbiol 29, 183-190.
14. Page, R. D. M. (1996). TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
15. Reddy, G. S. N., Matsumoto, G. I. & Shivaji, S. (2003). Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica. Int J Syst Evol Microbiol 53, 1363-1367.
16. Rodrigues, D. F., Goris, J., Vishnivetskaya, T., Gilichinsky, D., Thomashaw, M. F. & Tiedje, J. M. (2006). Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles 10, 285-294.
17. Sato, N. S. & Murata, N. (11988). Membrane lipids. Methods Enzymol 167, 251-259.
18. Shivaji, S., Shyamala Rao, N., Saisree, L., Reddy, G. S. N., Seshu Kumar, G. & Bhargava, P. M. (1989). Isolates of Arthrobacter from the soils of Schirmacher Oasis, Antarctica. Polar Biol 10, 225-229.
19. Shivaji, S., Ray, M. K, Shyamala Rao, N., Saisree, L., Jagannadham, M. V., Seshu Kumar, G., Reddy, G. S. N. & Bhargava, P. M. (1992). Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Bacteriol 42, 102-106.
20. Shivaji, S., Bhanu, V. N. & Aggarwal, R. K. (2000). Identification of Yersinia pestis as the causative organism of Plague in India as determined by 16S rDNA sequencing and RAPD-based genomic fingerprinting. FEMS Microbiol Lett 189, 247-252.
21. Shivaji, S., Reddy, G. S. N., Raghavan, P. U. M., Sarita, N. B. & Delille, D. (2004). Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. isolated from fast ice from Adelie Land, Antarctica. Syst Appl Microbiol 27, 628-635.
22. Shivaji, S., Chaturvedi, P., Reddy, G. S. N. & Suresh, K. (2005a). Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 55, 1083-1088.
23. Shivaji, S., Suresh, K., Chaturvedi, P., Dube, S. & Sengupta, S. (2005b). Bacillus arsenicus sp. nov., an arsenic-resistant bacterium isolated from a siderite concretion in West Bengal, India. Int J Syst Evol Microbiol 55, 1123-1127.
24. Shivaji, S., Gupta, P., Chaturvedi, P., Suresh, K. & Delille, D. (2005c). Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 55, 1453-1456.
25. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt. Washington, DC: American Society for Microbiology.
26. Stackebrandt, E. & Goebel, B. M. (1994). A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
27. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
28. Tourova, T. P. & Antonov, A. S. (1987). Identification of micro-organisms by rapid DNA-DNA hybridization. Methods Microbiol 19, 333-355.
29. Yumoto, I., Narisawa, M. H., Hirota, K., Shingyo, T., Takebe, F., Nodasaka, Y., Matsuyama, H. & Hara, I. (2004). Exiguobacterium oxidotolerans sp. nov., a novel alkaliphile exhibiting high catalase activity. Int J Syst Evol Microbiol 54, 2013-2017.