메뉴 건너뛰기




Volumn 38, Issue 3, 2004, Pages 253-270

Article: Collating texts using progressive multiple alignment

Author keywords

Dynamic programming; Multiple alignment; Stemma reconstruction; Text collation; Variants

Indexed keywords


EID: 33845715317     PISSN: 00104817     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10579-004-8682-1     Document Type: Article
Times cited : (19)

References (53)
  • 2
    • 0345706651 scopus 로고    scopus 로고
    • Blake N., Robinson P. (eds.). Office for Humanities Communication Publications, London
    • Blake N., Robinson P. (eds.) (1997) The Canterbury Tales Project Occasional Papers, Vol. II. Office for Humanities Communication Publications, London. 184 p.
    • (1997) The Canterbury Tales Project Occasional Papers , vol.2
  • 3
    • 0034566410 scopus 로고    scopus 로고
    • Small subunit ribosomal RNA modeling using stochastic context-free grammars
    • American Association for Artificial Intelligence
    • Brown M.P.S. (2000) Small Subunit Ribosomal RNA Modeling Using Stochastic Context-free Grammars. ISMB Proceedings 2000. American Association for Artificial Intelligence, pp. 57-66.
    • (2000) ISMB Proceedings 2000 , pp. 57-66
    • Brown, M.P.S.1
  • 4
    • 0002824009 scopus 로고
    • The upside-down cladogram: Problems in manuscript affiliation
    • Hoenigswald, H.M., Wiener, L.F. (eds.). Frances Pinter, London
    • Cameron H.D. (1987) The Upside-Down Cladogram: Problems in Manuscript Affiliation. In Hoenigswald, H.M., Wiener, L.F. (eds.), Biological Metaphor and Cladistic Classification: An Interdisciplinary Perspective. Frances Pinter, London, pp. 227-242.
    • (1987) Biological Metaphor and Cladistic Classification: An Interdisciplinary Perspective , pp. 227-242
    • Cameron, H.D.1
  • 5
    • 33845698269 scopus 로고
    • OPCOL: An optimal text collation algorithm
    • Cannon R.L., Jr. (1976) OPCOL: An Optimal Text Collation Algorithm. Computers and the Humanities, 10, pp. 33-40.
    • (1976) Computers and the Humanities , vol.10 , pp. 33-40
    • Cannon Jr., R.L.1
  • 7
    • 85035765163 scopus 로고    scopus 로고
    • Improved parallel and sequential walking tree methods for biological string alignments
    • Cull P., Hsu T. (1999) Improved Parallel and Sequential Walking Tree Methods for Biological String Alignments. Supercomputing' 99.
    • (1999) Supercomputing' 99
    • Cull, P.1    Hsu, T.2
  • 9
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng D.-F., Doolittle R.F. (1987) Progressive Sequence Alignment as a Prerequisite to Correct Phylogenetic Trees. Journal of Molecular Evolution, 25, pp. 351-360.
    • (1987) Journal of Molecular Evolution , vol.25 , pp. 351-360
    • Feng, D.-F.1    Doolittle, R.F.2
  • 10
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh O. (1982) An Improved Algorithm for Matching Biological Sequences. Journal of Molecular Biology, 162, pp. 705-708.
    • (1982) Journal of Molecular Biology , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 11
    • 0030582739 scopus 로고    scopus 로고
    • Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
    • Gotoh O. (1996) Significant Improvement in Accuracy of Multiple Protein Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural Alignments. Journal of Molecular Biology, 264, pp. 823-838.
    • (1996) Journal of Molecular Biology , vol.264 , pp. 823-838
    • Gotoh, O.1
  • 13
    • 0001002027 scopus 로고
    • An overview of sequence comparison: Time warps, string edits, and macromolecules
    • Kruskal J. B. (1983) An Overview of Sequence Comparison: Time Warps, String Edits, and Macromolecules. SIAM Review, 25, pp. 201-237.
    • (1983) SIAM Review , vol.25 , pp. 201-237
    • Kruskal, J.B.1
  • 14
    • 0026979939 scopus 로고
    • Techniques for automatically correcting words in text
    • Kukich K. (1992) Techniques for Automatically Correcting Words in Text. ACM Computing Surveys, 24, pp. 377-439.
    • (1992) ACM Computing Surveys , vol.24 , pp. 377-439
    • Kukich, K.1
  • 16
    • 0002532056 scopus 로고
    • The estimation of stochastic context-free grammars using the inside-outside algorithm
    • Lari K., Young S.J. (1990) The Estimation of Stochastic Context-Free Grammars Using the Inside-Outside Algorithm. Computer Speech and Language, 4, pp. 35-56.
    • (1990) Computer Speech and Language , vol.4 , pp. 35-56
    • Lari, K.1    Young, S.J.2
  • 17
    • 0003114525 scopus 로고
    • Numerical taxonomy revisited: john griffith, cladistic analysis and St. Augustine's quaestiones in heptateuchem
    • Lee A.R. (1989) Numerical Taxonomy Revisited: John Griffith, Cladistic Analysis and St. Augustine's Quaestiones in Heptateuchem. Stadia Patristica, 20, pp. 24-32.
    • (1989) Stadia Patristica , vol.20 , pp. 24-32
    • Lee, A.R.1
  • 18
    • 33845687232 scopus 로고
    • BLUDGEON: A blunt instrument for the analysis of contamination in textual traditions
    • Choueka, Y. (ed.). Champion-Slatkine, Paris
    • Lee A. R. (1990) BLUDGEON: A Blunt Instrument for the Analysis of Contamination in Textual Traditions. In Choueka, Y. (ed.), Computers in Literary and Linguistic Research. Champion-Slatkine, Paris, pp. 261-292.
    • (1990) Computers in Literary and Linguistic Research , pp. 261-292
    • Lee, A.R.1
  • 19
    • 0031350056 scopus 로고    scopus 로고
    • NEXUS: An extensible file format for systematic information
    • Maddison D.R., Swofford D.L., Maddison W.P. (1997) NEXUS: An Extensible File Format for Systematic Information. Systematic Biology, 46, pp. 590-621.
    • (1997) Systematic Biology , vol.46 , pp. 590-621
    • Maddison, D.R.1    Swofford, D.L.2    Maddison, W.P.3
  • 21
    • 1642263257 scopus 로고    scopus 로고
    • Stemmatic analysis of Lydgate's "Kings of England": A test case for the application of software developed for evolutionary biology to manuscript stemmatics
    • Mooney L.R., Barbrook A.C., Howe C.J., Spencer M. (2001) Stemmatic Analysis of Lydgate's "Kings of England": A Test Case for the Application of Software Developed for Evolutionary Biology to Manuscript Stemmatics. Revue d'Histoire des Textes, 31, pp. 275-297.
    • (2001) Revue d'Histoire des Textes , vol.31 , pp. 275-297
    • Mooney, L.R.1    Barbrook, A.C.2    Howe, C.J.3    Spencer, M.4
  • 22
    • 0345566149 scopus 로고    scopus 로고
    • A guided tour to approximate string matching
    • Navarro G. (2001) A Guided Tour to Approximate String Matching. ACM Computing Surveys, 33, pp. 31-88.
    • (2001) ACM Computing Surveys , vol.33 , pp. 31-88
    • Navarro, G.1
  • 23
    • 0036208872 scopus 로고    scopus 로고
    • Recent progresses in multiple sequence alignment: A survey
    • Notredame C. (2002) Recent Progresses in Multiple Sequence Alignment: A Survey. Pharmacogenomics, 3, pp. 131-144.
    • (2002) Pharmacogenomics , vol.3 , pp. 131-144
    • Notredame, C.1
  • 24
    • 0034623005 scopus 로고    scopus 로고
    • T-coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C., Higgins D.G., Heringa J. (2000) T-Coffee: A Novel Method for Fast and Accurate Multiple Sequence Alignment. Journal of Molecular Biology, 302, pp. 205-217.
    • (2000) Journal of Molecular Biology , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 25
    • 33845695407 scopus 로고
    • The output of collation programs
    • Ager, D.E., Knowles, F.E., Smith, J. (eds.). Department of Modern Languages, University of Aston, Birmingham
    • Ott W. (1979) The Output of Collation Programs. In Ager, D.E., Knowles, F.E., Smith, J. (eds.), Advances in Computer-Aided Literary and Linguistic Research. Department of Modern Languages, University of Aston, Birmingham, pp. 41-51.
    • (1979) Advances in Computer-aided Literary and Linguistic Research , pp. 41-51
    • Ott, W.1
  • 26
    • 33845719702 scopus 로고
    • Computers and textual editing
    • Butler, C.S. (ed.), Blackwell, Oxford
    • Ott W. (1992) Computers and Textual Editing. In Butler, C.S. (ed.), Computers and Written Texts, Blackwell, Oxford, pp. 205-226.
    • (1992) Computers and Written Texts , pp. 205-226
    • Ott, W.1
  • 27
    • 84937324681 scopus 로고    scopus 로고
    • Strategies and tools for textual scholarship: The Tübingen System of Text Processing Programs (TUSTEP)
    • Ott W. (2000) Strategies and Tools for Textual Scholarship: The Tübingen System of Text Processing Programs (TUSTEP). Literary and Linguistic Computing, 15, pp. 93-108.
    • (2000) Literary and Linguistic Computing , vol.15 , pp. 93-108
    • Ott, W.1
  • 29
    • 0000772503 scopus 로고
    • Cladistic methods in textual, linguistic, and phylogenetic analysis
    • Platnick N.I., Cameron H.D. (1977) Cladistic Methods in Textual, Linguistic, and Phylogenetic Analysis. Systematic Zoology, 26, pp. 380-385.
    • (1977) Systematic Zoology , vol.26 , pp. 380-385
    • Platnick, N.I.1    Cameron, H.D.2
  • 30
    • 0032405150 scopus 로고    scopus 로고
    • Applications of n-grams in textual information systems
    • Robertson A.M., Willett P. (1998) Applications of n-grams in Textual Information Systems. Journal of Documentation, 54, pp. 48-69.
    • (1998) Journal of Documentation , vol.54 , pp. 48-69
    • Robertson, A.M.1    Willett, P.2
  • 31
    • 33750116552 scopus 로고
    • Oxford University Computing Services, Oxford
    • Robinson P. (1994a) Collate 2: A User Guide. Oxford University Computing Services, Oxford, 137 p.
    • (1994) Collate 2: A User Guide
    • Robinson, P.1
  • 32
    • 0001922845 scopus 로고    scopus 로고
    • A stemmatic analysis of the fifteenth-century witnesses to the wife of Bath's prologue
    • Blake, N., Robinson, P. (eds.). Office for Humanities Communication Publications, London
    • Robinson P. (1997) A Stemmatic Analysis of the Fifteenth-Century Witnesses to The Wife of Bath's Prologue. In Blake, N., Robinson, P. (eds.), The Canterbury Tales Project: Occasional Papers Vol. II. Office for Humanities Communication Publications, London, pp. 69-132.
    • (1997) The Canterbury Tales Project: Occasional Papers Vol. II , pp. 69-132
    • Robinson, P.1
  • 33
    • 33845708931 scopus 로고
    • The collation and textual criticism of icelandic manuscripts. (1): Collation
    • Robinson P.M.W. (1989) The Collation and Textual Criticism of Icelandic Manuscripts. (1): Collation. Literary and Linguistic Computing, 4, pp. 99-105.
    • (1989) Literary and Linguistic Computing , vol.4 , pp. 99-105
    • Robinson, P.M.W.1
  • 35
    • 0012220344 scopus 로고    scopus 로고
    • Cladistic analysis of an old norse manuscript tradition
    • Hockey, S., Ide, N. (eds.). Oxford University Press, Oxford
    • Robinson P.M.W., O'Hara R.J. (1996) Cladistic Analysis of an Old Norse Manuscript Tradition. In Hockey, S., Ide, N. (eds.), Research in Humanities Computing 4. Oxford University Press, Oxford, pp. 115-137.
    • (1996) Research in Humanities Computing , vol.4 , pp. 115-137
    • Robinson, P.M.W.1    O'Hara, R.J.2
  • 37
    • 1642334738 scopus 로고    scopus 로고
    • Cladistics or the resurrection of the method of lachmann: On building the stemma of Yvain
    • van Reenen, P., van Mulken, M. (eds.). John Benjamins Publishing Company, Amsterdam
    • Salemans B.J.P. (1996) Cladistics or the Resurrection of the Method of Lachmann: On Building the Stemma of Yvain. In van Reenen, P., van Mulken, M. (eds.), Studies in Stemmatology. John Benjamins Publishing Company, Amsterdam, pp. 3-70.
    • (1996) Studies in Stemmatology , pp. 3-70
    • Salemans, B.J.P.1
  • 41
    • 84937340017 scopus 로고    scopus 로고
    • Estimating distances between manuscripts based on copying errors
    • Spencer M., Howe C.J. (2001) Estimating Distances between Manuscripts Based on Copying Errors. Literary and Linguistic Computing, 16, pp. 467-484.
    • (2001) Literary and Linguistic Computing , vol.16 , pp. 467-484
    • Spencer, M.1    Howe, C.J.2
  • 43
    • 1642315379 scopus 로고    scopus 로고
    • The Greek Vorlage of the Syra Harclensis: A comparative study on method in exploring textual genealogy
    • Spencer M., Wachtel K., Howe C.J. (2002) The Greek Vorlage of the Syra Harclensis: A Comparative Study on Method in Exploring Textual Genealogy. TC: a Journal of Biblical Textual Criticism 7.
    • (2002) TC: A Journal of Biblical Textual Criticism , vol.7
    • Spencer, M.1    Wachtel, K.2    Howe, C.J.3
  • 44
    • 26844469206 scopus 로고    scopus 로고
    • Representing multiple pathways of textual flow in' the Greek manuscripts of the letter of James using reduced median networks
    • Spencer M., Wachtel K., Howe C.J. (2004b) Representing Multiple Pathways of Textual Flow in' the Greek Manuscripts of the Letter of James Using Reduced Median Networks. Computers and the Humanities, 38, pp. 1-14.
    • (2004) Computers and the Humanities , vol.38 , pp. 1-14
    • Spencer, M.1    Wachtel, K.2    Howe, C.J.3
  • 45
    • 33845706024 scopus 로고    scopus 로고
    • TEI P4: Guidelines for electronic text encoding and interchange
    • Sperberg-McQueen C.M., Burnard L. (eds.), Oxford, Providence, Charlottesville, Bergen
    • Sperberg-McQueen C.M., Burnard L. (eds.) (2002) TEI P4: Guidelines for Electronic Text Encoding and Interchange. Text Encoding Initiative Consortium. XML Version, Oxford, Providence, Charlottesville, Bergen
    • (2002) Text Encoding Initiative Consortium. XML Version
  • 46
    • 1642380379 scopus 로고    scopus 로고
    • New philology and new phylogeny: Aspects of a critical electronic edition of Wolfram's parsival
    • Stoliz M. (2003) New Philology and New Phylogeny: Aspects of a Critical Electronic Edition of Wolfram's Parsival. Literary and Linguistic Computing, 18, pp. 139-150.
    • (2003) Literary and Linguistic Computing , vol.18 , pp. 139-150
    • Stoliz, M.1
  • 47
    • 0024114801 scopus 로고
    • A note on the neighbor-joining algorithm of Saitou and Nei
    • Studier J.A., Keppler K.J. (1988) A Note on the Neighbor-Joining Algorithm of Saitou and Nei. Molecular Biology and Evolution, 5, pp. 729-731.
    • (1988) Molecular Biology and Evolution , vol.5 , pp. 729-731
    • Studier, J.A.1    Keppler, K.J.2
  • 48
  • 50
    • 0027113212 scopus 로고
    • Approximate string-matching with q-grams and maximal matches
    • Ukkonen E. (1992) Approximate String-Matching with (q-grams and Maximal Matches. Theoretical Computer Science, 92, pp. 191-211.
    • (1992) Theoretical Computer Science , vol.92 , pp. 191-211
    • Ukkonen, E.1
  • 51
    • 84976666835 scopus 로고
    • On the complexity of the extended string-to-string correction problem
    • Albuquerque, New Mexico
    • Wagner R.A. (1975) On the Complexity of the Extended String-to-String Correction Problem. Proceedings of the 7th Annual ACM Symposium on Theory of Computing, Albuquerque, New Mexico, pp. 218-223.
    • (1975) Proceedings of the 7th Annual ACM Symposium on Theory of Computing , pp. 218-223
    • Wagner, R.A.1
  • 53
    • 0029701640 scopus 로고    scopus 로고
    • YAP3: Improved detection of similarities in computer program and other texts
    • Philadelphia, USA
    • Wise M.J. (1996) YAP3: Improved Detection of Similarities in Computer Program and Other Texts. SIGCSE'96, Philadelphia, USA, pp. 130-134.
    • (1996) SIGCSE'96 , pp. 130-134
    • Wise, M.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.