The stress protein ERp57/GRP58 binds specific DNA sequences in HeLa cells

Journal of Cellular Physiology

Volumn 210, Issue 2, 2007, Pages 343-351

  Chichiarelli, Silvia ^a   Ferraro, Anna ^a,b   Altieri, Fabio ^a,b   Eufemi, Margherita ^a   Coppari, Sabina ^a   Grillo, Caterina ^a   Arcangeli, Valentina ^a   Turano, Carlo ^a,b  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; DNA FRAGMENT; GLUCOSE REGULATED PROTEIN; GLUCOSE REGULATED PROTEIN 58; HEAT SHOCK PROTEIN; NUCLEAR PROTEIN; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; PROTEIN DISULFIDE ISOMERASE;

ARTICLE; BINDING SITE; CELL NUCLEUS; CELL STRESS; CELLULAR DISTRIBUTION; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; CYTOPLASM; DNA BINDING MOTIF; DNA DETERMINATION; DNA REPAIR; DNA SEQUENCE; ENDOPLASMIC RETICULUM; ENZYME ACTIVITY; ENZYME BINDING; ENZYME LOCALIZATION; ENZYME MECHANISM; ENZYME REGULATION; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENETIC ANALYSIS; HELA CELL; HUMAN; HUMAN CELL; INTRON; MATRIX ATTACHMENT REGION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN FAMILY; PROTEIN FUNCTION; REGULATORY MECHANISM; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; BINDING SITES; CELL NUCLEUS; DNA; DNA REPAIR; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION; HELA CELLS; HUMANS; INTRONS; MICE; PROTEIN BINDING; PROTEIN DISULFIDE-ISOMERASE; RATS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; STRESS;

EID: 33845610596     PISSN: 00219541     EISSN: None     Source Type: Journal    
DOI: 10.1002/jcp.20824     Document Type: Article

References (37)

1. Afshar N, Black BE, Paschal BM. 2005. Retrotranslocation of the chaperone calreticulin from the endoplasmic reticulum lumen to the cytosol. Mol Cell Biol 25:8844-8853.
2. Altieri F, Maras B, Eufemi M, Ferraro A, Turano C. 1993. Purification of a 57kDa nuclear matrix protein associated with thiol;protein-disulfide oxidoreductase and phospholipase C activities. Biochem Biophys Res Comm 194:992-1000.
3. Banjar ZM, Hnilica LS, Briggs RC, Stein J, Stein G. 1984. Cis- and trans-Diammine dichloro platinum(II)-mediated cross-linking of chromosomal non-histone proteins to DNA in HeLa cells. Biochemistry 23:1921-1926.
4. Belin D, Bost S, Vassalli JD, Strub K. 1996. A two-step recognition of signal sequences determines the translocation efficiency of proteins. EMBO J 15:468-478.
5. Bode J, Schlake T, Rios-Ramirez M, Mielke C, Stengert M, Kay V, Klehr-Wirth D. 1995. Scaffold/matrix-attached regions: Structural properties creating transcriptionally active loci. Int Rev Cytol 162A:389-454.
6. Chichiarelli S, Coppari S, Turano C, Eufemi M, Altieri F, Ferraro A. 2002. Immunoprecipitation of DNA-protein complexes cross-linked by cis-diamminedichloroplatinum. Anal Biochem 302:224-229.
7. Coppari S, Altieri F, Ferraro A, Chichiarelli S, Eufemi M, Turano S. 2002. Nuclear localization and DNA interaction of protein disulfide isomerase ERp57 in mammalian cells. J Cell Biochem 85:325-333.
8. Elliott JG, Oliver JD, High S. 1997. The thiol-dependent reductase ERp57 interacts specifically with N-glycosylated integral membrane proteins. J Biol Chem 272:13849-13855.
9. Eufemi M, Coppari S, Altieri F, Grillo C, Ferraro A, Turano C. 2004. ERp57 is present in STAT3-DNA complexes. Biochem Biophys Res Commun 323:1306-1312.
10. Feng J, Villeponteau B. 1992. High resolution analysis of c-fos chromatin accessibility using a novel DNase I-PCR assay. Biochim Biophys Acta 1130:253-258.
11. Ferraro A, Grandi P, Eufemi M, Altieri F, Turano C. 1992. Crosslinking of nuclear proteins to DNA by cis-diammine dichloroplatinum in intact cells. Involvement of nuclear matrix proteins. FEBS Letters 307:383-385.
12. Ferraro A, Altieri F, Coppari S, Eufemi M, Chichiarelli S, Turano C. 1999. Binding of the protein disulfide isomerase isoform ERp60 to the nuclear matrix-associated regions of DNA. J Cell Biochem 72:528-539.
13. Freedman RB, Hirst TR, Tuite MF. 1994. Protein disulphide isomerase: Building bridges in protein folding. Trends Biochem Sci 19:331-336.
14. Frisch M, Frech K, Klingenhoff A, Cartharius K, Liebich I, Werner T. 2002. In silico prediction of scaffold/matrix attachment regions in large genomic sequences. Genome Res 12:349-354.
15. Gasser SM, Laemmli UK. 1986. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46:521-530.
16. Gerner C, Holzmann K, Meissner M, Gotzmann J, Grimm R, Sauermann G. 1999. Reassembling proteins and chaperones in human nuclear matrix protein fractions. J Cell Biochem 74:145-151.
17. Grillo C, Coppari S, Turano C, Altieri F. 2002. The DNA-binding activity of protein disulfide isomerase ERp57 is associated with the a' domain. Biochem Biophys Res Commun 295:67-73.
18. Johnson E, Henzel W, Deisseroth A. 1992. An isoform of protein disulfide isomerase isolated from chronic myelogenous leukemia cells alters complex formation between nuclear proteins and regulatory regions of interferon-inducible genes. J Biol Chem 267:14412-14417.
19. 245 → Ser) in vivo. Oncogene 19:4178-4183.
20. Krynetski EY, Krynetskaia NF, Bianchi ME, Evans WE. 2003. A nuclear protein complex containing high mobility group proteins B1 and B2, heat shock cognate protein 70, ERp60, and glyceraldehyde-3-phosphate dehydrogenase is involved in the cytotoxic response to DNA modified by incorporation of anticancer nucleoside analogues. Cancer Res 63:100-106.
21. Lee A. 1987. Coordinated regulation of a set of genes by glucose and calcium ionophores in mammalian cells. Trends Biochem Sci 12:20-23.
22. Lee A. 2001. The glucose-regulated proteins: Stress induction and clinical applications. Trends Biochem Sci 26:504-510.
23. Lemaire MA, Schwartz A, Rahmouni AR, Leng M. 1991. Interstrand cross-links are preferentially formed at the d(GC) sites in the reaction between cis-diamminedichloroplatinum (II) and DNA. Proc Natl Acad Sci USA 88:1982-1985.
24. Lindquist JA, Jensen ON, Mann M, Hammerling GJ. 1998. ER-60, a chaperone with thiol-dependent reductase activity involved in MHC, class I assembly. EMBO J 17:2186-219526.
25. Markus M, Benezra R. 1999. Two isoforms of protein disulfide isomerase alter the dimerization status of E2A proteins by a redox mechanism. J Biol Chem 274:1040-1049.
26. Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. 2003. Distribution of NF-kappaB-binding sites across human chromosome 22. Proc Natl Acad Sci USA 100:12247-12252.
27. Mautner J, Joos S, Werner T, Eick D, Bornkamm GW, Polack A. 1995. Identification of two enhancer elements downstream of the human c-myc gene. Nucleic Acids Res 23:72-80.
28. Ndubuisi MI, Guo GG, Fried VA, Etlinger JD, Sehgal PB. 1999. Cellular physiology of STAT3: Where's the cytoplasmic monomer?, J Biol Chem 274:25499-25509.
29. Ohtani H, Wakui H, Ishino T, Komatsuda A, Miura B. 1993. An isoform of protein disulfide isomerase is expressed in the developing acrosome of spermatids during rat spermiogenesis and is transported into the nucleus of mature spermatids and epididymal spermatozoa. Histochem 100:423-429.
30. Orlando V, Strutt H, Paro R. 1997. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11:205-214.
31. Sambrook J, Russel DW. 2001. Molecular cloning. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
32. Singh GB, Kramer JA, Krawetz SA. 1997. Mathematical model to predict regions of chromatin attachment to the nuclear matrix. Nucleic Acids Res 25:1419-1425.
33. Stein GS, van Wijnen AJ, Stein J, Lian JB, Montecino M. 1995. Contributions of nuclear architecture to transcriptional control. Int Rev Cytol 162A:251-278.
34. Turano C, Coppari S, Altieri F, Ferraro A. 2002. Proteins of the PDI family: Unpredicted non-ER locations and functions. J Cell Physiol 193:154-163.
35. Urade R, Oda T, Ito H, Moriyama T, Utsumi S, Kito M. 1997. Functions of characteristic Cys-Gly-His-Cys (CGHC) and Gln-Glu-Asp-Leu (QEDL) motifs of microsomal ER-60 protease. J Biochem (Tokyo) 122:834-842.
36. Wyse B, Ali N, Ellison DH. 2002. Interaction with grp58 increases activity of the thiazide-sensitive Na-Cl cotransporter. Am J Physiol Renal Physiol 282:F424-30.
37. Zapun A, Darby NJ, Tessier DC, Michalak M, Bergeron JJ, Thomas DY. 1998. Enhanced catalysis of ribonuclease B folding by the interaction of calnexin or calreticulin with ERp57. J Biol Chem 273:6009-6012.