Functional identification of p-cumate operons in the terpene-degrading Rhodococcus sp. strain T104

FEMS Microbiology Letters

Volumn 266, Issue 1, 2007, Pages 54-59

  Bae, Hyun Won ^a,f   Kim, Dockyu ^b,g   Choi, Ki Young ^a   Kwon, Na Ra ^a   Chae, Jong Chan ^c   Zylstra, Gerben J ^c   Koh, Sung Cheol ^d   Lee, Choong Hwan ^b,e   Kim, Eungbin ^a  

^a Yonsei University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c RUTGERS UNIVERSITY   (United States)

^d Korea Maritime University   (South Korea)

^e Konkuk University   (South Korea)

^f Korean Institute of Tuberculosis   (South Korea)

^g Chosun University   (South Korea)

Author keywords

Aromatic dioxygenase; p cumate; Rhodococcus

Indexed keywords

2,3 DIHYDROXY 4 CUMATE; 4 CUMATE; ALKYL GROUP; AROMATIC HYDROCARBON; DIOXYGENASE; TERPENE;

ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CMT GENE; DEGRADATION; GENE CLUSTER; GENE IDENTIFICATION; GENETIC ORGANIZATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETER; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHODOCOCCUS;

BENZOATES; CHROMATOGRAPHY, LIQUID; GENE ORDER; MASS SPECTROMETRY; MUTATION; OPERON; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RHODOCOCCUS; TERPENES;

POSIBACTERIA; RHODOCOCCUS; RHODOCOCCUS SP.;

EID: 33845545777     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00497.x     Document Type: Article

References (12)

1. Bae HW, Chae J-C, Zylstra G, Koh S-C & Kim E (2005) Molecular cloning and characterization of a gene cluster inducible by p-cymene and p-cumate from a terpene-degrading Rhodococcus sp. T104. Annu Meet Am Soc Microbiol, Abstract, Q285.
2. Carlton BC & Brown BJ (1981) Manual of Methods for General Bacteriology (Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Krieg NR & Phillips GB, eds), pp. 224-225. American Society for Microbiology, Washington, DC.
3. Choi KY, Kim D, Koh S-C, So J-S, Kim JS & Kim E (2004) Molecular cloning and identification of a novel oxygenase gene that is specifically induced during the growth of Rhodococcus sp. strain T104 on limonene. J Microbiol 42: 160-162.
4. Eaton RW (1996) p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon. J Bacteriol 178: 1351-1362.
5. Eaton RW (1997) p-Cymene catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J Bacteriol 179: 3171-3180.
6. Hernandez BS, Koh S-C, Chial M & Focht DD (1997) Terpene-utilizing isolates and their relevance to enhanced biotransformation of polychlorinated biphenyls in soil. Biodegradation 8: 153-158.
7. Kim D, Park MJ, Koh S-C, So J-S & Kim E (2002) Three separate pathways for the initial oxidation of limonene, biphenyl, and phenol by Rhodococcus sp. strain T104. J Microbiol 40: 86-89.
8. Lee K, Ryu EK, Choi KS, Cho MC, Jeong JJ, Choi EN, Lee SO, Yoon DY, Hwang I & Kim CK (2006) Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: expression of the regulatory todST genes as a factor for catabolic adaptation. J Microbiol 44: 192-199.
9. Mahenthiralingam E (1998) Extraction of RNA from mycobacteria. Methods Mol Biol 101: 65-75.
10. Omori T, Matsubara M, Masuda S & Kodama T (1991) Production of 4,5-dihydro-4,5-dihydroxyphthalate from phthalate by a mutant of Pseudomonas testosterone M4-1. Appl Microbiol Biotechnol 35: 431-435.
11. Puskas LG, Inui M, Kele Z & Yukawa H (2000) Cloning of genes participating in aerobic biodegradation of p-cumate from Rhodopseudomonas palustris. DNA Seq 11: 9-20.
12. Stanier RY, Palleroni NJ & Doudoroff M (1966) The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43: 159-271.