메뉴 건너뛰기




Volumn 377, Issue 1-2, 2007, Pages 108-113

Multiple strand displacement amplification of DNA isolated from human archival plasma/serum: Identification of cytokine polymorphism by pyrosequencing analysis

Author keywords

Cytokine SNP; Multiple strand displacement amplification; Plasma serum samples; Pyrosequencing; Whole genome amplification

Indexed keywords

DNA 16S; GENOMIC DNA; INTERLEUKIN 1BETA;

EID: 33845484437     PISSN: 00098981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cca.2006.09.003     Document Type: Article
Times cited : (5)

References (26)
  • 1
    • 0037303129 scopus 로고    scopus 로고
    • Risk factors for peptic ulcer disease: a population based prospective cohort study comprising 2416 Danish adults
    • Rosenstock S., Jorgensen T., Bonnevie O., and Andersen L. Risk factors for peptic ulcer disease: a population based prospective cohort study comprising 2416 Danish adults. Gut 52 (2003) 186-193
    • (2003) Gut , vol.52 , pp. 186-193
    • Rosenstock, S.1    Jorgensen, T.2    Bonnevie, O.3    Andersen, L.4
  • 2
    • 0035856021 scopus 로고    scopus 로고
    • Helicobacter pylori infection and the development of gastric cancer
    • Uemura N., Okamoto S., Yamamoto S., et al. Helicobacter pylori infection and the development of gastric cancer. N Engl J Med 345 (2001) 784-789
    • (2001) N Engl J Med , vol.345 , pp. 784-789
    • Uemura, N.1    Okamoto, S.2    Yamamoto, S.3
  • 3
    • 0033870377 scopus 로고    scopus 로고
    • Prevalence of gastroduodenitis and Helicobacter pylori infection in a general population sample: relations to symptomatology and life-style
    • Borch K., Jönsson K.-Å., Petersson F., Redéen S., Mårdh S., and Fransén L.E. Prevalence of gastroduodenitis and Helicobacter pylori infection in a general population sample: relations to symptomatology and life-style. Dig Dis Sci 45 (2000) 1322-1329
    • (2000) Dig Dis Sci , vol.45 , pp. 1322-1329
    • Borch, K.1    Jönsson, K.-Å.2    Petersson, F.3    Redéen, S.4    Mårdh, S.5    Fransén, L.E.6
  • 4
    • 0242383464 scopus 로고    scopus 로고
    • The burden of Helicobacter pylori infection in Europe
    • O'Connor H., and Sebastian S. The burden of Helicobacter pylori infection in Europe. Aliment Pharmacol Ther 18 Suppl 3 (2003) 38-44
    • (2003) Aliment Pharmacol Ther , vol.18 , Issue.SUPPL. 3 , pp. 38-44
    • O'Connor, H.1    Sebastian, S.2
  • 5
    • 0038240648 scopus 로고    scopus 로고
    • Burden of Helicobacter pylori and H. pylori-related diseases in developed countries: recent developments and future implications
    • Rothenbacher D., and Brenner H. Burden of Helicobacter pylori and H. pylori-related diseases in developed countries: recent developments and future implications. Microbes Infect 5 (2003) 693-703
    • (2003) Microbes Infect , vol.5 , pp. 693-703
    • Rothenbacher, D.1    Brenner, H.2
  • 6
    • 85008278699 scopus 로고    scopus 로고
    • ABC of the upper gastrointestinal tract: epidemiology and diagnosis of Helicobacter pylori infection
    • Logan R.P., and Walker M.M. ABC of the upper gastrointestinal tract: epidemiology and diagnosis of Helicobacter pylori infection. BMJ 323 (2001) 920-922
    • (2001) BMJ , vol.323 , pp. 920-922
    • Logan, R.P.1    Walker, M.M.2
  • 7
    • 0042315396 scopus 로고    scopus 로고
    • Synergistic effect of Helicobacter pylori virulence factors and interleukin-1 polymorphism for the development of severe histological changes in the gastric mucosa
    • Rad R., Prinz C., Neu B., et al. Synergistic effect of Helicobacter pylori virulence factors and interleukin-1 polymorphism for the development of severe histological changes in the gastric mucosa. J Infect Dis 188 (2003) 272-281
    • (2003) J Infect Dis , vol.188 , pp. 272-281
    • Rad, R.1    Prinz, C.2    Neu, B.3
  • 8
    • 0037146297 scopus 로고    scopus 로고
    • Helicobacter pylori and interleukin 1 genotyping: an opportunity to identify high-risk individuals for gastric carcinoma
    • Figueiredo C., Machado J.C., Pharoah P., et al. Helicobacter pylori and interleukin 1 genotyping: an opportunity to identify high-risk individuals for gastric carcinoma. J Natl Cancer Inst 94 (2002) 1680-1687
    • (2002) J Natl Cancer Inst , vol.94 , pp. 1680-1687
    • Figueiredo, C.1    Machado, J.C.2    Pharoah, P.3
  • 9
    • 0034704880 scopus 로고    scopus 로고
    • Interleukin-1 polymorphism associated with increased risk of gastric cancer
    • El-Omar E.M., Carrington M., Chow W.H., et al. Interleukin-1 polymorphism associated with increased risk of gastric cancer. Nature 404 (2000) 398-402
    • (2000) Nature , vol.404 , pp. 398-402
    • El-Omar, E.M.1    Carrington, M.2    Chow, W.H.3
  • 10
    • 0034812285 scopus 로고    scopus 로고
    • Unlocking the archive-gene expression in paraffin-embedded tissue
    • Lewis F., Maughan N.J., Smith V., Hillan K., and Quirke P. Unlocking the archive-gene expression in paraffin-embedded tissue. J Pathol 195 (2001) 66-71
    • (2001) J Pathol , vol.195 , pp. 66-71
    • Lewis, F.1    Maughan, N.J.2    Smith, V.3    Hillan, K.4    Quirke, P.5
  • 11
    • 23444462084 scopus 로고    scopus 로고
    • An alternative protocol for DNA extraction from formalin fixed and paraffin wax embedded tissue
    • Coura R., Prolla J.C., Meurer L., and Ashton-Prolla P. An alternative protocol for DNA extraction from formalin fixed and paraffin wax embedded tissue. J Clin Pathol 58 (2005) 894-895
    • (2005) J Clin Pathol , vol.58 , pp. 894-895
    • Coura, R.1    Prolla, J.C.2    Meurer, L.3    Ashton-Prolla, P.4
  • 12
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple strand displacement amplification
    • Dean F.B., Hosono S., Fang L., et al. Comprehensive human genome amplification using multiple strand displacement amplification. Proc Natl Acad Sci U S A 99 (2002) 5261-5266
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 5261-5266
    • Dean, F.B.1    Hosono, S.2    Fang, L.3
  • 13
    • 0038781878 scopus 로고    scopus 로고
    • Unbiased whole-genome amplification directly from clinical samples
    • Hosono S., Faruqi A.F., Dean F.B., et al. Unbiased whole-genome amplification directly from clinical samples. Genome Res 13 (2003) 954-964
    • (2003) Genome Res , vol.13 , pp. 954-964
    • Hosono, S.1    Faruqi, A.F.2    Dean, F.B.3
  • 14
    • 0242475336 scopus 로고    scopus 로고
    • Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens
    • Lasken R.S., and Egholm M. Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 21 (2003) 531-535
    • (2003) Trends Biotechnol , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 15
    • 32944473037 scopus 로고    scopus 로고
    • Use of whole genome amplification to rescue DNA from plasma samples
    • Lu Y., Gioia-Patricola L., Gomez J.V., et al. Use of whole genome amplification to rescue DNA from plasma samples. Biotechniques 39 (2005) 511-515
    • (2005) Biotechniques , vol.39 , pp. 511-515
    • Lu, Y.1    Gioia-Patricola, L.2    Gomez, J.V.3
  • 16
    • 12844283887 scopus 로고    scopus 로고
    • Comparison of archival plasma and formalin-fixed paraffin-embedded tissue for genotyping in hepatocellular carcinoma
    • Sjöholm M.I., Hoffmann G., Lindgren S., Dillner J., and Carlson J. Comparison of archival plasma and formalin-fixed paraffin-embedded tissue for genotyping in hepatocellular carcinoma. Cancer Epidemiol Biomarkers Prev 14 (2005) 251-255
    • (2005) Cancer Epidemiol Biomarkers Prev , vol.14 , pp. 251-255
    • Sjöholm, M.I.1    Hoffmann, G.2    Lindgren, S.3    Dillner, J.4    Carlson, J.5
  • 17
    • 0031876199 scopus 로고    scopus 로고
    • Identification of Helicobacter in gastric biopsies by PCR based on 16S rDNA sequences: a matter of little significance for the prediction of H. pylori-associated gastritis?
    • Tiveljung A., Borch K., Jonasson J., Mårdh S., Petersson F., and Monstein H.J. Identification of Helicobacter in gastric biopsies by PCR based on 16S rDNA sequences: a matter of little significance for the prediction of H. pylori-associated gastritis?. J Med Microbiol 47 (1998) 695-704
    • (1998) J Med Microbiol , vol.47 , pp. 695-704
    • Tiveljung, A.1    Borch, K.2    Jonasson, J.3    Mårdh, S.4    Petersson, F.5    Monstein, H.J.6
  • 18
    • 27744480558 scopus 로고    scopus 로고
    • Multiple strand displacement amplification of DNA from human colon and rectum biopsies: bacterial profiling and identification of Helicobacter pylori-DNA by means of 16S rDNA-based TTGE and pyrosequencing analysis
    • Monstein H.J., Olsson C., Nilsson I., Grahn N., Benoni C., and Ahrné S. Multiple strand displacement amplification of DNA from human colon and rectum biopsies: bacterial profiling and identification of Helicobacter pylori-DNA by means of 16S rDNA-based TTGE and pyrosequencing analysis. J Microbiol Methods 63 (2005) 239-247
    • (2005) J Microbiol Methods , vol.63 , pp. 239-247
    • Monstein, H.J.1    Olsson, C.2    Nilsson, I.3    Grahn, N.4    Benoni, C.5    Ahrné, S.6
  • 19
    • 27944476422 scopus 로고    scopus 로고
    • Multiple strand displacement amplification of isolated DNA from human gallstones: molecular identification of Helicobacter DNA by means of 16S rDNA-based pyrosequencing analysis
    • Nilsson I., Shabo I., Svanvik J., and Monstein H.J. Multiple strand displacement amplification of isolated DNA from human gallstones: molecular identification of Helicobacter DNA by means of 16S rDNA-based pyrosequencing analysis. Helicobacter 10 (2005) 592-600
    • (2005) Helicobacter , vol.10 , pp. 592-600
    • Nilsson, I.1    Shabo, I.2    Svanvik, J.3    Monstein, H.J.4
  • 20
    • 0035873176 scopus 로고    scopus 로고
    • Rapid molecular identification and subtyping of Helicobacter pylori by pyrosequencing of the 16S rDNA variable V1 and V3 regions
    • Monstein H., Nikpour-Badr S., and Jonasson J. Rapid molecular identification and subtyping of Helicobacter pylori by pyrosequencing of the 16S rDNA variable V1 and V3 regions. FEMS Microbiol Lett 199 (2001) 103-107
    • (2001) FEMS Microbiol Lett , vol.199 , pp. 103-107
    • Monstein, H.1    Nikpour-Badr, S.2    Jonasson, J.3
  • 21
    • 24344458983 scopus 로고    scopus 로고
    • Whole-genome amplification: relative efficiencies of the current methods
    • Sun G., Kaushal R., Pal P., et al. Whole-genome amplification: relative efficiencies of the current methods. Leg Med (Tokyo) 7 (2005) 279-286
    • (2005) Leg Med (Tokyo) , vol.7 , pp. 279-286
    • Sun, G.1    Kaushal, R.2    Pal, P.3
  • 22
    • 1942504709 scopus 로고    scopus 로고
    • Rapid combined characterization of microorganism and host genotypes using a single technology
    • Hjalmarsson S., Alderborn A., Fock C., et al. Rapid combined characterization of microorganism and host genotypes using a single technology. Helicobacter 9 (2004) 138-145
    • (2004) Helicobacter , vol.9 , pp. 138-145
    • Hjalmarsson, S.1    Alderborn, A.2    Fock, C.3
  • 24
    • 0037436159 scopus 로고    scopus 로고
    • Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons
    • Grahn N., Olofsson M., Ellnebo-Svedlund K., Monstein H.J., and Jonasson J. Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons. FEMS Microbiol Lett 219 (2003) 87-91
    • (2003) FEMS Microbiol Lett , vol.219 , pp. 87-91
    • Grahn, N.1    Olofsson, M.2    Ellnebo-Svedlund, K.3    Monstein, H.J.4    Jonasson, J.5
  • 25
    • 20444472433 scopus 로고    scopus 로고
    • Multiple strand displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments
    • Gonzalez J.M., Portillo M.C., and Saiz-Jimenez C. Multiple strand displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments. Environ Microbiol 7 (2005) 1024-1028
    • (2005) Environ Microbiol , vol.7 , pp. 1024-1028
    • Gonzalez, J.M.1    Portillo, M.C.2    Saiz-Jimenez, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.