Combined use of Overhauser spectroscopy and NMR diffusion experiments for mapping the hydration structure of nucleosides: Structure and dynamics of uridine in water

Magnetic Resonance in Chemistry

Volumn 44, Issue 12, 2006, Pages 1109-1117

  Seba, Hadj B ^a   Thureau, Pierre ^a   Ancian, Bernard ^a,b   Thévand, André ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

^b UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

13C NMR; 1H NMR; Chemical exchange; DOSY; HOESY; Intermolecular interactions; iRRT; NMR; NOE; Uridine

Indexed keywords

AMIDES; AROMATIC COMPOUNDS; BIOMOLECULES; DIFFUSION; HYDRATION; HYDROGEN BONDS; NUCLEIC ACIDS;

13C NMR; 1H NMR; CHEMICAL EXCHANGE; DOSY; HOESY; INTERMOLECULAR INTERACTIONS; IRRT; NMR DIFFUSION; NUCLEAR OVERHAUSER EFFECTS; URIDINE;

NUCLEAR MAGNETIC RESONANCE;

EID: 33845264178     PISSN: 07491581     EISSN: 1097458X     Source Type: Journal    
DOI: 10.1002/mrc.1909     Document Type: Article

References (53)

1. Saenger W. Principles of Nucleic Acid Structure. Springer-Verlag: New York, 1984.
2. Jeffrey GA, Saenger W. Hydrogen Bonding in Biological Structure. Springer-Verlag: New York, 1991.
3. Berman HH. Curr. Opin. Struct. Biol. 1994; 4: 345.
4. Schneider BHM. Biophysics 1995; 69: 725.
5. Saenger W. Annu. Rev. Biophys. Biophys. Chem. 1987; 16: 93.
6. Gogonea V, Suárez D, Van der Vaart A, Merz KM. Curr. Opin. Struct. Biol. 2001; 11: 217.
7. Wüthrich K. NMR of Proteins and Nucleic Acids. Wiley: New York, 1986.
8. Davies DB. Prog. Nucl. Magn. Reson. Spectrosc. 1978; 12: 135.
9. Schirmer RE, Davis JP, Noggle JH, Hart PA. J. Am. Chem. Soc. 1972; 94: 2561.
10. Neumann JM, Bernassau JM, Guéron M, Tran-Dinh S. Eur. J. Biochem. 1980; 108: 457.
11. Neuhaus D, Williamson M. The Nuclear Overhauser Effect in Structural and Conformational Analysis. VCH: Weinheim, 1989.
12. Maltseva TV, Földesi A, Chattopadhyaya J. Magn. Reson. Chem. 1998; 36: 227.
13. Iganaki F, Miyazawa T. Prog. Nucl. Magn. Reson. Spectrosc. 1981; 14: 67.
14. Stilbs P. Prog. Nucl. Magn. Reson. Spectrosc. 1987; 19: 1.
15. Johnson CS Jr. Prog. Nucl. Magn. Reson. Spectrosc. 1999; 34: 203.
16. Morris GA. In Encyclopedia of NMR, vol. 9, Grant DM, Harris RK (eds). Wiley: New York, 2002; 35.
17. Johnson CS Jr. J. Magn. Reson. A 1993; 102: 214.
18. Cabrita EJ, Berger S, Brauer P, Kärger J. J. Magn. Reson. 2002; 157: 124.
19. Makarov V, Pettitt BM, Feig M. Acc. Chem. Res. 2002; 35: 376.
20. Brand T, Cabrita EJ, Berger S. Prog. Nucl. Magn. Reson. Spectrosc. 2005; 46: 159.
21. Cohen Y, Avram L, Frish L. Angew. Chem., Int. Ed. Engl. 2005; 44: 520.
22. Bagno A, Rastrelli F, Saielli G. Prog. Nucl. Magn. Reson. Spectrosc. 2005; 47: 41.
23. Seba HB, Ancian B. J. Chem. Soc. Chem. Commun. 1990; 996.
24. Chahinian M, Seba HB, Ancian B. Chem. Phys. Lett. 1998; 285: 337.
25. Ancian B, Canet D, Mutzenhardt P. Chem. Phys. Lett. 2001; 336: 410.
26. Thureau P, Ancian B, Viel S, Thevand A. Chem. Commun. 2006; 200.
27. Lyerla JR, Levy GC. In Topics in Carbon-13 NMR Spectroscopy, vol. 1, Levy GC (ed). Wiley-Interscience: New York, 1974; 79.
28. Ancian B, Tiffon B, Dubois JE. J. Magn. Reson. 1979; 34: 647.
29. Gierer A, Wirtz K. Z. Naturforsch. A 1953; 8: 532.
30. Schwartz HM, Mac Coss M, Danyluk SS. J. Am. Chem. Soc. 1983; 105: 5901.
31. Beyere L, Arboleda P, Monga V, Loppnow GR. Can. J. Chem. 2004; 82: 1092.
32. Rinaldi PL. J. Am. Chem. Soc. 1983; 105: 5167.
33. Yu C, Levy GC. J. Am. Chem. Soc. 1983; 105: 6994.
34. Yu C, Levy GC. J. Am. Chem. Soc. 1984; 106: 6533.
35. Macura S, Ernst RR. Mol. Phys. 1980; 41: 95.
36. Kövér KE, Batta G. Prog. Nucl. Magn. Reson. Spectrosc. 1987; 19: 223.
37. Ernst RR, Bodenhausen G, Wokaun A. Principles of Nuclear Magnetic Resonance in One and Two Dimensions. Clarendon Press: Oxford, 1987.
38. Sklenáo V. J. Magn. Reson. A 1995; 114: 132.
39. Fritzsche H, Kann LS, Ts'o POP. Biochemistry 1981; 20: 6118.
40. Guéron M, Leroy JL. Methods Enzymol. 1995; 261: 383.
41. Abragam A. Principles of Nuclear Magnetism. Clarendon Press: Oxford, 1961.
42. Otting G, Liepinsh E. Acc. Chem. Res. 1995; 28: 171.
43. Pal SK, Peon J, Bagchi B, Zewail AH. J. Phys. Chem. B 2002; 106: 12376.
44. Gaigeot MP, Sprik M. J. Phys. Chem. B 2004; 108: 7458.
45. Woutersen S, Mu Y, Stock G, Hamm P. Chem. Phys. 2001; 266: 137.
46. Eisenberg D, Kauzmann W. The Structure and Properties of Water. Clarendon Press: Oxford, 1969.
47. Wüthrich K, Otting G, Liepinsh E. Faraday Discuss. 1992; 93: 35.
48. Bigler P, Müller C. J. Magn. Reson. 1988; 79: 45.
49. Kövér KE, Batta G. J. Magn. Reson. 1988; 79: 206.
50. Chen J, Shaka AJ, Mandelshtam VA. J. Magn. Reson. 2000; 147: 129.
51. Mandelshtam VA. Prog. Nucl. Magn. Reson. Spectrosc. 2001; 38: 159.
52. Armstrong GS, Loening NM, Curtis JE, Shaka AJ, Mandelshtam VA. J. Magn. Reson. 2003; 163: 139.
53. Thureau P, Ancian B, Thevand A, Escavabaja P, Armstrong GS, Mandelshtam VA. ChemPhysChem 2005; 6: 1510.