Microarrays for undergraduate classes

Biochemistry and Molecular Biology Education

Volumn 34, Issue 6, 2006, Pages 432-437

  Hancock, Dale ^a   Nguyen, Lisa L ^a   Denyer, Gareth S ^a   Johnston, Jill M ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Bioinformatics; Gene expression; Microarray technology; Undergraduate education

Indexed keywords

ALLYL COMPOUND; AMINE; COMPLEMENTARY DNA; DIMETHYL SULFOXIDE; RNA; URIDINE TRIPHOSPHATE;

ANIMAL CELL; ARTICLE; BIOINFORMATICS; BIOTECHNOLOGY; CELL CULTURE; DATA BASE; DNA HYBRIDIZATION; DNA MICROARRAY; DOWN REGULATION; ERYTHROLEUKEMIA CELL; ERYTHROPOIESIS; GENE EXPRESSION; MICROARRAY ANALYSIS; MOLECULAR BIOLOGY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; QUALITY CONTROL; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; STUDENT; UPREGULATION;

MURINAE;

EID: 33845254108     PISSN: 14708175     EISSN: None     Source Type: Journal    
DOI: 10.1002/bmb.2006.494034062682     Document Type: Article

References (16)

1. M. Schena, D. Shalon, R. W. Davis, P. O. Brown (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray (see comment), Science 270, 467-470.
2. M. Shena (2003), Microarray Analysis, Wiley-Liss, Hoboken, NJ.
3. A. Kumar (2005) Teaching systems biology: An active-learning approach, Cell Biol. Educ. 4, 323-329.
4. L. J. Heyer, D. Z. Moskowitz, J. A. Abele, P. Karnik, D. Choi, A. M. Campbell, E. E. Oldham, B. K. Akin (2005) MAGIC Tool: Integrated microarray data analysis, Bioinformatics (Oxf.) 21, 2114-2115.
5. J. L. Brewster, K. B. Beason, T. T. Eckdahl, I. M. Evans (2004) The Microarray revolution: Perspectives from educators, Biochem. Mol. Biol. Educ. 32, 217-227.
6. P. A. Marks, Z. Chen, J. Banks, R. A. Rifkind (1983) Erythroleukemia cells: Variants inducible for hemoglobin synthesis without commitment to terminal cell division, Proc. Natl. Acad. Sci. U. S. A. 80, 2281-2284.
7. P. A. Marks, M. Sheffery, R. Ramsay, K. Ikeda, R. A. Rifkind (1987) Induction of transformed cells to terminal differentiation, Ann. N. Y. Acad. Sci. 511, 246-255.
8. P. A. Marks, M. Sheffery, R. A. Rifkind (1987) Induction of transformed cells to terminal differentiation and the modulation of gene expression, Cancer Res. 47, 659-666.
9. H. S. Heo, J. H. Kim, Y. J. Lee, S. H. Kim, Y. S. Cho, C. G. Kim (2005) Microarray profiling of genes differentially expressed during erythroid differentiation of murine erythroleukemia cells, Mol. Cells 20, 57-68.
10. E. Manduchi, L. M. Scearce, J. E. Brestelli, G. R. Grant, K. H. Kaestner, C. J. Stoeckert, Jr. (2002) Comparison of different labeling methods for two-channel high-density microarray experiments, Physiol. Genomics 10, 169-179.
11. J. M. Chirgwin, A. E. Przybyla, R. J. MacDonald, W. J. Rutter (1979) Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease, Biochemistry 18, 5294-5299.
12. P. Chomczynski, N. Sacchi (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction, Anal. Biochem. 162, 156-159.
13. H. Lehrach, D. Diamond, J. M. Wozney, H. Boedtker (1977) RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination, Biochemistry 16, 4743-4751.
14. A. K. Busch, D. Cordery, G. S. Denyer, T. J. Biden (2002) Expression profiling of palmitate- and oleate-regulated genes provides novel insights into the effects of chronic lipid exposure on pancreatic beta-cell function, Diabetes 51, 977-987.
15. N. A. Johnson, S. Sengupta, S. A. Saidi, K. Lessan, S. D. Charnock-Jones, L. Scott, R. Stephens, T. C. Freeman, B. D. Tom, M. Harris, G. Denyer, M. Sundaram, R. Sasisekharan, S. K. Smith, C. G. Print (2004) Endothelial cells preparing to die by apoptosis initiate a program of transcriptome and glycome regulation, FASEB J. 18, 188-190.
16. J. Quackenbush (2002) Microarray data normalization and transformation, Nat. Genet. 32, (Suppl.) 496-501.