Direct observation of substrate-enzyme complexation by surface forces measurement

Journal of the American Chemical Society

Volumn 128, Issue 47, 2006, Pages 15209-15214

  Suzuki, Takehiro ^a,c   Zhang, Yuan Wei ^a   Koyama, Tanetoshi ^a   Sasaki, Darryl Y ^b   Kurihara, Kazue ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b SANDIA NATIONAL LABORATORIES   (United States)

^c NATIONAL INSTITUTE FOR ENVIRONMENTAL STUDIES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; CATALYST ACTIVITY; COMPLEXATION; MOLECULAR DYNAMICS; POSITIVE IONS; QUARTZ; SUBSTRATES; SURFACE CHEMISTRY;

BIOLOGICAL REACTIONS; FARNESYL DIPHOSPHATE (FPP); QUARTZ CRYSTAL MICROBALANCE (QCM); SUBSTRATE ENZYME COMPLEXATION;

ENZYMES;

FARNESYL DIPHOSPHATE; HEPTAPRENYL DIPHOSPHATE SYNTHASE; MAGNESIUM; PRENYLAMINE; PYROPHOSPHATE; SILICON DIOXIDE;

ARTICLE; ATOMIC FORCE MICROSCOPY; CATALYSIS; COMPLEX FORMATION; CONCENTRATION (PARAMETERS); CRYSTAL; DISSOCIATION; ENZYME MECHANISM; ENZYME SUBSTRATE COMPLEX; FORCE; MEASUREMENT; MOLECULAR INTERACTION; REACTION ANALYSIS; SURFACE PROPERTY;

ALKYL AND ARYL TRANSFERASES; BACILLUS SUBTILIS; KINETICS; MAGNESIUM; MICROSCOPY, ATOMIC FORCE; POLYISOPRENYL PHOSPHATES; PROTEIN SUBUNITS;

EID: 33845230898     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja061822k     Document Type: Article

References (40)

1. Primary account of this work: Suzuki, T.; Zhang, Y.-W.; Koyama, T.; Sasaki, D. Y.; Kurihara, K. Chem. Lett. 2004, 33, 536.
2. Rivas, G.; Stafford, W.; Minton, A. P. Methods 1999, 19, 194.
3. Smith, E. A.; Thomas, W. D.; Kiessling, L. L.; Corn, R. M. J. Am. Chem. Soc. 2003, 125, 6140.
4. Yun, Z.; Vladislav, T.; Megahna, S.; Xiangqun, Z.; George, W. P. J. Am. Chem. Soc. 2003, 125, 9292.
5. Binnig, G.; Quate, C. F.; Gerber, C. Phys. Rev. Lett. 1986, 56, 2048.
6. Israelachvili, J. N.; Adams, G. J. Chem. Soc., Faraday Trans. 1 1978, 74, 975.
7. Moy, V. T.; Florin, E.-L.; Gaub, H. E. Science, 1994, 266, 257.
8. Wong, J.; Chilkoti, A.; Moy, V. T. Biomol. Eng. 1999, 16, 45.
9. Oberhauser, A. F.; Marszalek, P. E.; Carrion-Vazquez, M.; Fernandez, J. M. Nat. Struct. Biol. 1999, 6, 1025.
10. Rief, M.; Gautel, M.; Gaub, H. E. Adv. Exp. Med. Biol. 2000, 481, 129.
11. Oesterhelt, F.; Oesterhelt, D.; Pfeiffer, M.; Engel, A.; Gaub, H. E.; Müller, D. J. Science 2000, 288, 143.
12. Ogura, K.; Koyama, T. Chem. Rev., 1998, 98, 1263.
13. Takahashi, I.; Ogura, K.; Seto, S. J. Biol. Chem. 1980, 255, 4539.
14. Fujii, H.; Koyama, T.; Ogura, K. FEBS Lett. 1983, 161, 257.
15. Zhang, Y.-W.; Koyama, T.; Ogura, K. J. Bacteriol. 1997, 179, 1417.
16. Zhang, Y.-W.; Koyama, T.; Marecak, D. M.; Prestwich, G. D.; Maki, Y.; Ogura, K. Biochemistry 1998, 37, 13411.
17. Tarshis, L. C.; Yan, M.; Poulter, C. D.; Sacchettini, J. C. Biochemistry 1994, 33, 10871.
18. Joly A.; Edwards, P. A. J. Biol. Chem., 1993, 268, 26983.
19. Song, L.; Poulter, C. D. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 3044.
20. Koyama, T.; Tajima, M.; Sano, H.; Doi, T.; Koike-Takeshita, A.; Obata, S.; Nishino, T.; Ogura, K. Biochemistry 1996, 35, 9533.
21. Fujihashi, M.; Zhang, Y.-W.; Higuchi, Y.; Li, X.-Y.; Koyama, T.; Maki, K. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 4337.
22. Koyama, T.; Tajima, M.; Nishino, T.; Ogura, K. Biochem. Biophys. Res. Commun. 1995, 212, 681.
23. Zhang, Y.-W.; Li, X.-Y. Sugawara, H.; Koyama, T. Biochemistry 1999, 38, 14638.
24. Zhang, Y.-W. Doctoral dissertation, Tohoku University, 1997.
25. Davisson, V. J.; Woodside, A. B.; Neal, T. R.; Stremler, K. E.; Muehlbacher, M.; Poulter, C. D. J. Org. Chem. 1986, 51, 4768.
26. Shnek, D. R.; Pack, D. W.; Sasaki, D. Y.; Arnold, F. H. Langmuir 1994, 10, 2382.
27. Ishiguro, R.; Sasaki, D. Y.; Pacheco, C.; Kurihara, K. Colloids Surf., A 1999, 146, 329.
28. Okahata, Y.; Niikura, K.; Sugiura, Y.; Sawada, M.; Morii, T. Biochemistry 1998, 37, 5666.
29. Sauerbrey, G. Z. Phys. 1959, 155, 206.
30. Okahata, Y.; Kawase, M.; Niikura, K.; Ohtake, F.; Furusawa, H.; Ebara, Y. Anal. Chem. 1998, 70, 1288.
31. Ducker, W. A.; Senden, T. J. Langmuir 1992, 8, 1831.
32. Mizukami, M.; Moteki, M.; Kurihara, K. J. Am. Chem. Soc. 2002, 124, 12889.
33. Israelachivili, J. N. Intermolecular and Surface Forces, 2nd ed.; Academic Press: London, 1991.
34. Chan, D. Y. C.; Pashley, R. M.; White, L. R. J. Colloid Interface Sci. 1980, 77, 283.
35. 40 Our data of Sigma A also agree with this report if we assume the difference between QCM and AFM based values is due to the hydration. Therefore, we think that we can reasonably estimate the adsorbed amount of proteins based on the QCM data because in this study we used water soluble proteins similar to Sigma A and lysozyme. About FPP, the influence of hydration should be much less because FPP has a long hydrophobic tail.
36. Claesson, P. M.; Christenson, H. K. J. Phys. Chem. 1988, 92, 1650.
37. Kurihara, K.; Kunitake, T. J. Am. Chem. Soc. 1992, 114, 10927.
38. 2 for our AFM measurement.
39. Kurihara, K.; Suzuki, T.; Ishiguro, R. Proc. OUMS 2004, 137.
40. Smith, A. L.; Shirazi, H. M.; Mulligan, S. R. Biochim. Biophys. Acta 2002, 1594, 150.