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Volumn 9, Issue 4, 2006, Pages 379-391

Characterization of a method for profiling gene expression in cells recovered from intact human prostate tissue using RNA linear amplification

Author keywords

[No Author keywords available]

Indexed keywords

BETA MICROSEMINOPROTEIN; HEPSIN; RNA;

EID: 33751584862     PISSN: 13657852     EISSN: 14765608     Source Type: Journal    
DOI: 10.1038/sj.pcan.4500888     Document Type: Article
Times cited : (16)

References (50)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 3
    • 0029852580 scopus 로고    scopus 로고
    • Use of a cDNA microarray to analyse gene expression patterns in human cancer
    • DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M et al. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat Genet 1996; 14: 457-460.
    • (1996) Nat Genet , vol.14 , pp. 457-460
    • DeRisi, J.1    Penland, L.2    Brown, P.O.3    Bittner, M.L.4    Meltzer, P.S.5    Ray, M.6
  • 6
    • 0035970050 scopus 로고    scopus 로고
    • Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer
    • Welsh JB, Zarrinkar PP, Sapinoso LM, Kern SG, Behling CA, Monk BJ et al. Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer. Proc Natl Acad Sci USA 2001; 98: 1176-1181.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1176-1181
    • Welsh, J.B.1    Zarrinkar, P.P.2    Sapinoso, L.M.3    Kern, S.G.4    Behling, C.A.5    Monk, B.J.6
  • 7
    • 0037188477 scopus 로고    scopus 로고
    • Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
    • Dudley AM, Aach J, Steffen MA, Church GM. Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc Natl Acad Sci USA 2002; 99: 7554-7559.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7554-7559
    • Dudley, A.M.1    Aach, J.2    Steffen, M.A.3    Church, G.M.4
  • 8
    • 0035872073 scopus 로고    scopus 로고
    • An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression
    • Yue H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL et al. An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression. Nucleic Acids Res 2001; 29: E41-1.
    • (2001) Nucleic Acids Res , vol.29
    • Yue, H.1    Eastman, P.S.2    Wang, B.B.3    Minor, J.4    Doctolero, M.H.5    Nuttall, R.L.6
  • 9
    • 0036713497 scopus 로고    scopus 로고
    • Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA
    • Iscove NN, Barbara M, Gu M, Gibson M, Modi C, Winegarden N. Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. Nat Biotechnol 2002; 20: 940-943.
    • (2002) Nat Biotechnol , vol.20 , pp. 940-943
    • Iscove, N.N.1    Barbara, M.2    Gu, M.3    Gibson, M.4    Modi, C.5    Winegarden, N.6
  • 10
    • 0036281003 scopus 로고    scopus 로고
    • RNA amplification results in reproducible microarray data with slight ratio bias
    • 1336, 1338, 1340
    • Puskas LG, Zvara A, Hackler Jr L, Van Hummelen P. RNA amplification results in reproducible microarray data with slight ratio bias. Biotechniques 2002; 32: 1330-1334, 1336, 1338, 1340.
    • (2002) Biotechniques , vol.32 , pp. 1330-1334
    • Puskas, L.G.1    Zvara, A.2    Hackler Jr., L.3    Van Hummelen, P.4
  • 14
    • 25444531467 scopus 로고    scopus 로고
    • Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays
    • Wadenback J, Clapham DH, Craig D, Sederoff R, Peter GF, von Arnold S et al. Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays. BMC Genom 2005; 6: 61.
    • (2005) BMC Genom , vol.6 , pp. 61
    • Wadenback, J.1    Clapham, D.H.2    Craig, D.3    Sederoff, R.4    Peter, G.F.5    von Arnold, S.6
  • 15
    • 17144426480 scopus 로고    scopus 로고
    • Genistein inhibits p38 map kinase activation, matrix metalloproteinase type 2, and cell invasion in human prostate epithelial cells
    • Huang X, Chen S, Xu L, Liu Y, Deb DK, Platanias LC et al. Genistein inhibits p38 map kinase activation, matrix metalloproteinase type 2, and cell invasion in human prostate epithelial cells. Cancer Res 2005; 65: 3470-3478.
    • (2005) Cancer Res , vol.65 , pp. 3470-3478
    • Huang, X.1    Chen, S.2    Xu, L.3    Liu, Y.4    Deb, D.K.5    Platanias, L.C.6
  • 16
    • 0043068003 scopus 로고    scopus 로고
    • p38 MAP kinase modulates Smad-dependent changes in human prostate cell adhesion
    • Hayes SA, Huang X, Kambhampati S, Platanias LC, Bergan RC. p38 MAP kinase modulates Smad-dependent changes in human prostate cell adhesion. Oncogene 2003; 22: 4841-4850.
    • (2003) Oncogene , vol.22 , pp. 4841-4850
    • Hayes, S.A.1    Huang, X.2    Kambhampati, S.3    Platanias, L.C.4    Bergan, R.C.5
  • 17
    • 18744362140 scopus 로고    scopus 로고
    • Over expression of endoglin in human prostate cancer suppresses cell detachment, migration and invasion
    • Liu Y, Jovanovic B, Pins M, Lee C, Bergan RC. Over expression of endoglin in human prostate cancer suppresses cell detachment, migration and invasion. Oncogene 2002; 21: 8272-8281.
    • (2002) Oncogene , vol.21 , pp. 8272-8281
    • Liu, Y.1    Jovanovic, B.2    Pins, M.3    Lee, C.4    Bergan, R.C.5
  • 18
    • 0031668416 scopus 로고    scopus 로고
    • Growth inhibition of chronic myelogenous leukemia cells by ODN-1, an aptameric inhibitor of p210bcr-abl tyrosine kinase activity
    • Schwartz GN, Liu YQ, Tisdale J, Walshe K, Fowler D, Gress R et al. Growth inhibition of chronic myelogenous leukemia cells by ODN-1, an aptameric inhibitor of p210bcr-abl tyrosine kinase activity. Antisense Nucleic Acid Drug Dev 1998; 8: 329-339.
    • (1998) Antisense Nucleic Acid Drug Dev , vol.8 , pp. 329-339
    • Schwartz, G.N.1    Liu, Y.Q.2    Tisdale, J.3    Walshe, K.4    Fowler, D.5    Gress, R.6
  • 19
    • 0142236715 scopus 로고    scopus 로고
    • A daptive gene picking with microarray data: Detecting important low abundance signals
    • In: G Parmigiani EG, RA Irizarry, SL Zeger (eds). Springer-Verlag: New York
    • Lin Y NS, Lan H, Attie AD, Yandell BS. A daptive gene picking with microarray data: Detecting important low abundance signals. In: G Parmigiani EG, RA Irizarry, SL Zeger (eds). The Analysis of Gene Expression Data: Methods and Software. Springer-Verlag: New York, 2003.
    • (2003) The Analysis of Gene Expression Data: Methods and Software
    • Lin, Y.N.S.1    Lan, H.2    Attie, A.D.3    Yandell, B.S.4
  • 20
    • 0031017360 scopus 로고    scopus 로고
    • Genistein-induced apoptosis of prostate cancer cells is preceded by a specific decrease in focal adhesion kinase activity
    • Kyle E, Neckers L, Takimoto C, Curt G, Bergan R. Genistein-induced apoptosis of prostate cancer cells is preceded by a specific decrease in focal adhesion kinase activity. Mol Pharmacol 1997; 51: 193-200.
    • (1997) Mol Pharmacol , vol.51 , pp. 193-200
    • Kyle, E.1    Neckers, L.2    Takimoto, C.3    Curt, G.4    Bergan, R.5
  • 21
    • 0031928243 scopus 로고    scopus 로고
    • Prostate cancer cell growth inhibition by tamoxifen is associated with inhibition of protein kinase C and induction of p21(waf1/cip1)
    • Rohlff C, Blagosklonny MV, Kyle E, Kesari A, Kim IY, Zelner DJ et al. Prostate cancer cell growth inhibition by tamoxifen is associated with inhibition of protein kinase C and induction of p21(waf1/cip1). Prostate 1998; 37: 51-59.
    • (1998) Prostate , vol.37 , pp. 51-59
    • Rohlff, C.1    Blagosklonny, M.V.2    Kyle, E.3    Kesari, A.4    Kim, I.Y.5    Zelner, D.J.6
  • 22
    • 0035552386 scopus 로고    scopus 로고
    • A simple analysis of gene expression and variability in gene arrays based on repeated observations
    • Jovanovic BD, Huang S, Liu Y, Naguib KN, Bergan RC. A simple analysis of gene expression and variability in gene arrays based on repeated observations. Am J Pharmacogenom 2001; 1: 145-152.
    • (2001) Am J Pharmacogenom , vol.1 , pp. 145-152
    • Jovanovic, B.D.1    Huang, S.2    Liu, Y.3    Naguib, K.N.4    Bergan, R.C.5
  • 23
  • 24
    • 3042748163 scopus 로고    scopus 로고
    • Microarray analysis in clinical oncology: Pre-clinical optimization using needle core biopsies from xenograft tumors
    • Goley EM, Anderson SJ, Menard C, Chuang E, Lu X, Tofilon PJ et al. Microarray analysis in clinical oncology: Pre-clinical optimization using needle core biopsies from xenograft tumors. BMC Cancer 2004; 4: 20.
    • (2004) BMC Cancer , vol.4 , pp. 20
    • Goley, E.M.1    Anderson, S.J.2    Menard, C.3    Chuang, E.4    Lu, X.5    Tofilon, P.J.6
  • 25
    • 0141849160 scopus 로고    scopus 로고
    • Comparative analysis of amplified and nonamplified RNA for hybridization in cDNA microarray
    • Gomes LI, Silva RL, Stolf BS, Cristo EB, Hirata R, Soares FA et al. Comparative analysis of amplified and nonamplified RNA for hybridization in cDNA microarray. Anal Biochem 2003; 321: 244-251.
    • (2003) Anal Biochem , vol.321 , pp. 244-251
    • Gomes, L.I.1    Silva, R.L.2    Stolf, B.S.3    Cristo, E.B.4    Hirata, R.5    Soares, F.A.6
  • 27
    • 10844235652 scopus 로고    scopus 로고
    • Androgen-independent prostate cancer is a heterogeneous group of diseases: Lessons from a rapid autopsy program
    • Shah RB, Mehra R, Chinnaiyan AM, Shen R, Ghosh D, Zhou M et al. Androgen-independent prostate cancer is a heterogeneous group of diseases: Lessons from a rapid autopsy program. Cancer Res 2004; 64: 9209-9216.
    • (2004) Cancer Res , vol.64 , pp. 9209-9216
    • Shah, R.B.1    Mehra, R.2    Chinnaiyan, A.M.3    Shen, R.4    Ghosh, D.5    Zhou, M.6
  • 28
    • 0032941245 scopus 로고    scopus 로고
    • Prostate secretory protein (PSP94) suppresses the growth of androgen-independent prostate cancer cell line (PC3) and xenografts by inducing apoptosis
    • Garde SV, Basrur VS, Li L, Finkelman MA, Krishan A, Wellham L et al. Prostate secretory protein (PSP94) suppresses the growth of androgen-independent prostate cancer cell line (PC3) and xenografts by inducing apoptosis. Prostate 1999; 38: 118-125.
    • (1999) Prostate , vol.38 , pp. 118-125
    • Garde, S.V.1    Basrur, V.S.2    Li, L.3    Finkelman, M.A.4    Krishan, A.5    Wellham, L.6
  • 29
    • 0031921229 scopus 로고    scopus 로고
    • Cellular expression of beta-microseminoprotein (beta-MSP) mRNA and its protein in untreated prostate cancer
    • Tsurusaki T, Koji T, Sakai H, Kanetake H, Nakane PK, Saito Y. Cellular expression of beta-microseminoprotein (beta-MSP) mRNA and its protein in untreated prostate cancer. Prostate 1998; 35: 109-116.
    • (1998) Prostate , vol.35 , pp. 109-116
    • Tsurusaki, T.1    Koji, T.2    Sakai, H.3    Kanetake, H.4    Nakane, P.K.5    Saito, Y.6
  • 30
    • 0032858242 scopus 로고    scopus 로고
    • In situ hybridization study of PSP94 (prostatic secretory protein of 94 amino acids) expression in human prostates
    • Chan PS, Chan LW, Xuan JW, Chin JL, Choi HL, Chan FL. In situ hybridization study of PSP94 (prostatic secretory protein of 94 amino acids) expression in human prostates. Prostate 1999; 41: 99-109.
    • (1999) Prostate , vol.41 , pp. 99-109
    • Chan, P.S.1    Chan, L.W.2    Xuan, J.W.3    Chin, J.L.4    Choi, H.L.5    Chan, F.L.6
  • 32
    • 0035423118 scopus 로고    scopus 로고
    • Expression profiling reveals hepsin overexpression in prostate cancer
    • Magee JA, Araki T, Patil S, Ehrig T, True L, Humphrey PA et al. Expression profiling reveals hepsin overexpression in prostate cancer. Cancer Res 2001; 61: 5692-5696.
    • (2001) Cancer Res , vol.61 , pp. 5692-5696
    • Magee, J.A.1    Araki, T.2    Patil, S.3    Ehrig, T.4    True, L.5    Humphrey, P.A.6
  • 34
    • 14244249740 scopus 로고    scopus 로고
    • Regulation of gene expression in magnocellular neurons in rat supraoptic nucleus during sustained hypoosmolality
    • Mutsuga N, Shahar T, Verbalis JG, Xiang CC, Brownstein MJ, Gainer H. Regulation of gene expression in magnocellular neurons in rat supraoptic nucleus during sustained hypoosmolality. Endocrinology 2005; 143: 1254-1267.
    • (2005) Endocrinology , vol.143 , pp. 1254-1267
    • Mutsuga, N.1    Shahar, T.2    Verbalis, J.G.3    Xiang, C.C.4    Brownstein, M.J.5    Gainer, H.6
  • 35
    • 0035959741 scopus 로고    scopus 로고
    • Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis
    • Alevizos I, Mahadevappa M, Zhang X, Ohyama H, Kohno Y, Posner M et al. Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis. Oncogene 2001; 20: 6196-6204.
    • (2001) Oncogene , vol.20 , pp. 6196-6204
    • Alevizos, I.1    Mahadevappa, M.2    Zhang, X.3    Ohyama, H.4    Kohno, Y.5    Posner, M.6
  • 37
    • 0037320528 scopus 로고    scopus 로고
    • Accurate and reproducible gene expression profiles from laser capture microdissection, transcript amplification, and high density oligonucleotide microarray analysis
    • Luzzi V, Mahadevappa M, Raja R, Warrington JA, Watson MA. Accurate and reproducible gene expression profiles from laser capture microdissection, transcript amplification, and high density oligonucleotide microarray analysis. J Mol Diagn 2003; 5: 9-14.
    • (2003) J Mol Diagn , vol.5 , pp. 9-14
    • Luzzi, V.1    Mahadevappa, M.2    Raja, R.3    Warrington, J.A.4    Watson, M.A.5
  • 38
    • 31144467863 scopus 로고    scopus 로고
    • Gene expression profiling of gastric cancer by microarray combined with laser capture microdissection
    • Wu MS, Lin YS, Chang YT, Shun CT, Lin MT, Lin JT. Gene expression profiling of gastric cancer by microarray combined with laser capture microdissection. World J Gastroenterol 2005; 11: 7405-7412.
    • (2005) World J Gastroenterol , vol.11 , pp. 7405-7412
    • Wu, M.S.1    Lin, Y.S.2    Chang, Y.T.3    Shun, C.T.4    Lin, M.T.5    Lin, J.T.6
  • 40
    • 0033845380 scopus 로고    scopus 로고
    • Gene expression profiles in squamous cell carcinomas of the oral cavity: Use of laser capture microdissection for the construction and analysis of stage-specific cDNA libraries
    • Leethanakul C, Patel V, Gillespie J, Shillitoe E, Kellman RM, Ensley JF et al. Gene expression profiles in squamous cell carcinomas of the oral cavity: Use of laser capture microdissection for the construction and analysis of stage-specific cDNA libraries. Oral Oncol 2000; 36: 474-483.
    • (2000) Oral Oncol , vol.36 , pp. 474-483
    • Leethanakul, C.1    Patel, V.2    Gillespie, J.3    Shillitoe, E.4    Kellman, R.M.5    Ensley, J.F.6
  • 41
    • 31544456658 scopus 로고    scopus 로고
    • Application of oligonucleotide microarrays to assess the biological effects of neoadjuvant imatinib mesylate treatment for localized prostate cancer
    • Febbo PG, Thorner A, Rubin MA, Loda M, Kantoff PW, Oh WK et al. Application of oligonucleotide microarrays to assess the biological effects of neoadjuvant imatinib mesylate treatment for localized prostate cancer. Clin Cancer Res 2006; 12: 152-158.
    • (2006) Clin Cancer Res , vol.12 , pp. 152-158
    • Febbo, P.G.1    Thorner, A.2    Rubin, M.A.3    Loda, M.4    Kantoff, P.W.5    Oh, W.K.6
  • 42
    • 7544231132 scopus 로고    scopus 로고
    • Use of RNA amplification in the optimal characterization of global gene expression using cDNA microarrays
    • Stoyanova R, Upson JJ, Patriotis C, Ross EA, Henske EP, Datta K et al. Use of RNA amplification in the optimal characterization of global gene expression using cDNA microarrays. J Cell Physiol 2004; 201: 359-365.
    • (2004) J Cell Physiol , vol.201 , pp. 359-365
    • Stoyanova, R.1    Upson, J.J.2    Patriotis, C.3    Ross, E.A.4    Henske, E.P.5    Datta, K.6
  • 43
    • 14244249740 scopus 로고    scopus 로고
    • Regulation of gene expression in magnocellular neurons in rat supraoptic nucleus during sustained hypoosmolality
    • Mutsuga N, Shahar T, Verbalis JG, Xiang CC, Brownstein MJ, Gainer H. Regulation of gene expression in magnocellular neurons in rat supraoptic nucleus during sustained hypoosmolality. Endocrinology 2005; 146: 1254-1267.
    • (2005) Endocrinology , vol.146 , pp. 1254-1267
    • Mutsuga, N.1    Shahar, T.2    Verbalis, J.G.3    Xiang, C.C.4    Brownstein, M.J.5    Gainer, H.6
  • 47
    • 9444266431 scopus 로고    scopus 로고
    • Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis
    • Zhao H, Hastie T, Whitfield ML, Borresen-Dale AL, Jeffrey SS. Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis. BMC Genom 2002; 3: 31.
    • (2002) BMC Genom , vol.3 , pp. 31
    • Zhao, H.1    Hastie, T.2    Whitfield, M.L.3    Borresen-Dale, A.L.4    Jeffrey, S.S.5
  • 48
    • 2442672860 scopus 로고    scopus 로고
    • Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments
    • Schneider J, Buness A, Huber W, Volz J, Kioschis P, Hafner M et al. Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments. BMC Genom 2004; 5: 29.
    • (2004) BMC Genom , vol.5 , pp. 29
    • Schneider, J.1    Buness, A.2    Huber, W.3    Volz, J.4    Kioschis, P.5    Hafner, M.6


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