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Volumn 42, Issue 4, 2006, Pages 200-207

Diversity of Paenibacillus durus strains isolated from soil and different plant rhizospheres evaluated by ARDRA and gyrB-RFLP analysis

Author keywords

ARDRA; Diversity; gyrB RFLP; Paenibacillus durus; Rhizospheres

Indexed keywords

PAENIBACILLUS DURUS; POACEAE; TRITICUM AESTIVUM; ZEA MAYS;

EID: 33751515396     PISSN: 11645563     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejsobi.2006.03.002     Document Type: Article
Times cited : (7)

References (34)
  • 1
    • 12344279464 scopus 로고    scopus 로고
    • Differential exudation of two benzoxazinoids -one of the determining factors for seedling allelopathy of Triticeae species
    • Belz R.G., and Hurle K. Differential exudation of two benzoxazinoids -one of the determining factors for seedling allelopathy of Triticeae species. J. Agric. Food Chem. 53 (2005) 250-261
    • (2005) J. Agric. Food Chem. , vol.53 , pp. 250-261
    • Belz, R.G.1    Hurle, K.2
  • 2
    • 0036201564 scopus 로고    scopus 로고
    • Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food
    • Berge O., Guinebretière M.H., Achouak W., Normand P., and Heulin T. Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int. J. Syst. Evol. Microbiol. 52 (2002) 607-616
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 607-616
    • Berge, O.1    Guinebretière, M.H.2    Achouak, W.3    Normand, P.4    Heulin, T.5
  • 3
    • 0038397514 scopus 로고    scopus 로고
    • Characterization of nitrogen-fixing Paenibacillus species by polymerase chain reaction-restriction fragment polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis
    • Coelho M.M.R., von der Weid I., Zahner V., and Seldin L. Characterization of nitrogen-fixing Paenibacillus species by polymerase chain reaction-restriction fragment polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis. FEMS Microbiol. Lett. 222 (2003) 243-250
    • (2003) FEMS Microbiol. Lett. , vol.222 , pp. 243-250
    • Coelho, M.M.R.1    von der Weid, I.2    Zahner, V.3    Seldin, L.4
  • 4
    • 0036701963 scopus 로고    scopus 로고
    • Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence
    • Fakushima M., Kakinuma K., and Kawaguchi R. Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J. Clin. Microbiol. 40 (2002) 2779-2785
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2779-2785
    • Fakushima, M.1    Kakinuma, K.2    Kawaguchi, R.3
  • 6
    • 0030220506 scopus 로고    scopus 로고
    • Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
    • Heyndrickx M., Vauterin L., Vandamme P., Kersters K., and De Vos P. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Meth. 26 (1996) 247-259
    • (1996) J. Microbiol. Meth. , vol.26 , pp. 247-259
    • Heyndrickx, M.1    Vauterin, L.2    Vandamme, P.3    Kersters, K.4    De Vos, P.5
  • 8
    • 0036418046 scopus 로고    scopus 로고
    • Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms
    • Kowalchuk G.A., Buma D.S., De Boer W., Klinkhamer P.G., and van Veen J.A. Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie Van Leeuwenhoek 81 (2002) 509-520
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 509-520
    • Kowalchuk, G.A.1    Buma, D.S.2    De Boer, W.3    Klinkhamer, P.G.4    van Veen, J.A.5
  • 9
    • 1142297445 scopus 로고    scopus 로고
    • gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group
    • La Duc M.T., Satomi M., Agata M., and Venkateswaran K. gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group. J. Microbiol. Meth. 56 (2004) 383-394
    • (2004) J. Microbiol. Meth. , vol.56 , pp. 383-394
    • La Duc, M.T.1    Satomi, M.2    Agata, M.3    Venkateswaran, K.4
  • 10
    • 0034851136 scopus 로고    scopus 로고
    • Soil and plant specific effect on bacterial community composition in the rhizosphere
    • Marschner P., Yang C.-H., Lieberei R., and Crowley D.E. Soil and plant specific effect on bacterial community composition in the rhizosphere. Soil Biol. Bioch. 33 (2001) 1437-1445
    • (2001) Soil Biol. Bioch. , vol.33 , pp. 1437-1445
    • Marschner, P.1    Yang, C.-H.2    Lieberei, R.3    Crowley, D.E.4
  • 11
    • 0026616612 scopus 로고
    • Genetic and phenotypic diversity of Paenibacillus polymyxa in soil and in the wheat rhizosphere
    • Mavingui P., Laguerre G., Berge O., and Heulin T. Genetic and phenotypic diversity of Paenibacillus polymyxa in soil and in the wheat rhizosphere. Appl. Environ. Microbiol. 58 (1992) 1894-1903
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 1894-1903
    • Mavingui, P.1    Laguerre, G.2    Berge, O.3    Heulin, T.4
  • 12
    • 0036262815 scopus 로고    scopus 로고
    • Genetic diversity of Paenibacillus polymyxa populations isolated from the rhizosphere of four cultivars of maize (Zea mays) planted in cerrado soil
    • Mota F.F., Nóbrega A., Marriel I.E., Paiva E., and Seldin L. Genetic diversity of Paenibacillus polymyxa populations isolated from the rhizosphere of four cultivars of maize (Zea mays) planted in cerrado soil. Appl. Soil Ecol. 20 (2002) 119-132
    • (2002) Appl. Soil Ecol. , vol.20 , pp. 119-132
    • Mota, F.F.1    Nóbrega, A.2    Marriel, I.E.3    Paiva, E.4    Seldin, L.5
  • 13
    • 0033827636 scopus 로고    scopus 로고
    • Differentiation of clinical Mycobacterium tuberculosis complex isolates by gyrB DNA sequence polymorphism analysis
    • Niemann S., Harmsen D., Rüsch-Gerdes S., and Richter E. Differentiation of clinical Mycobacterium tuberculosis complex isolates by gyrB DNA sequence polymorphism analysis. J. Clin. Microbiol. 38 (2000) 3231-3234
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3231-3234
    • Niemann, S.1    Harmsen, D.2    Rüsch-Gerdes, S.3    Richter, E.4
  • 14
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNA in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., and Backhaus H. Sequence heterogeneities of genes encoding 16S rRNA in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178 (1996) 5636-5643
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 16
    • 0004252391 scopus 로고
    • John Wiley & Sons, Inc, A Wiley-Interscience Publication, New York
    • Rencher A.C. Methods of multivariate analysis (1995), John Wiley & Sons, Inc, A Wiley-Interscience Publication, New York
    • (1995) Methods of multivariate analysis
    • Rencher, A.C.1
  • 17
    • 0029890314 scopus 로고    scopus 로고
    • Quantitative 16S rDNA-targeted polymerase chain reaction and oligonucleotide hybridization for the detection of Paenibacillus azotofixans in soil and the wheat rhizosphere
    • Rosado A.S., Seldin L., Wolters A.C., and van Elsas J.D. Quantitative 16S rDNA-targeted polymerase chain reaction and oligonucleotide hybridization for the detection of Paenibacillus azotofixans in soil and the wheat rhizosphere. FEMS Microbiol. Ecol. 19 (1996) 153-164
    • (1996) FEMS Microbiol. Ecol. , vol.19 , pp. 153-164
    • Rosado, A.S.1    Seldin, L.2    Wolters, A.C.3    van Elsas, J.D.4
  • 18
    • 0031931483 scopus 로고    scopus 로고
    • Phenotypic and genetic diversity of Paenibacillus azotofixans strains isolated from the rhizoplane or rhizosphere soil of different grasses
    • Rosado A.S., de Azevedo F.S., da Cruz D.W., van Elsas J.D., and Seldin L. Phenotypic and genetic diversity of Paenibacillus azotofixans strains isolated from the rhizoplane or rhizosphere soil of different grasses. J. Appl. Microbiol. 84 (1998) 216-226
    • (1998) J. Appl. Microbiol. , vol.84 , pp. 216-226
    • Rosado, A.S.1    de Azevedo, F.S.2    da Cruz, D.W.3    van Elsas, J.D.4    Seldin, L.5
  • 19
    • 0031927989 scopus 로고    scopus 로고
    • Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soils samples by denaturing gradient gel electrophoresis of PCR-amplified gene fragments
    • Rosado A.S., Duarte G.F., Seldin L., and van Elsas J.D. Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soils samples by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl. Environ. Microbiol. 64 (1998) 2770-2779
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2770-2779
    • Rosado, A.S.1    Duarte, G.F.2    Seldin, L.3    van Elsas, J.D.4
  • 21
    • 21144480451 scopus 로고
    • Primary characterization of the bacteriophage BA-4 from a nitrogen-fixing Bacillus azotofixans strain
    • Seldin L. Primary characterization of the bacteriophage BA-4 from a nitrogen-fixing Bacillus azotofixans strain. Microbios 71 (1992) 167-177
    • (1992) Microbios , vol.71 , pp. 167-177
    • Seldin, L.1
  • 22
    • 0021928234 scopus 로고
    • DNA homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans and other nitrogen fixing Bacillus strains
    • Seldin L., and Dubnau D. DNA homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans and other nitrogen fixing Bacillus strains. Int. J. Syst. Bacteriol. 35 (1985) 151-154
    • (1985) Int. J. Syst. Bacteriol. , vol.35 , pp. 151-154
    • Seldin, L.1    Dubnau, D.2
  • 23
    • 0022992153 scopus 로고
    • Identification of Bacillus azotofixans using API tests
    • Seldin L., and Penido E.G.C. Identification of Bacillus azotofixans using API tests. Antonie Van Leeuwenhoek 52 (1986) 403-409
    • (1986) Antonie Van Leeuwenhoek , vol.52 , pp. 403-409
    • Seldin, L.1    Penido, E.G.C.2
  • 24
    • 0025402223 scopus 로고
    • Production of a bacteriophage, a phage tail-like bacteriocin and an antibiotic by Bacillus azotofixans
    • Seldin L., and Penido E.G.C. Production of a bacteriophage, a phage tail-like bacteriocin and an antibiotic by Bacillus azotofixans. An. Acad. Bras. Cien. 62 (1990) 85-94
    • (1990) An. Acad. Bras. Cien. , vol.62 , pp. 85-94
    • Seldin, L.1    Penido, E.G.C.2
  • 25
    • 0001451022 scopus 로고
    • Bacillus nitrogen fixers from Brazilian soils
    • Seldin L., van Elsas J.D., and Penido E.G.C. Bacillus nitrogen fixers from Brazilian soils. Plant Soil 70 (1983) 243-255
    • (1983) Plant Soil , vol.70 , pp. 243-255
    • Seldin, L.1    van Elsas, J.D.2    Penido, E.G.C.3
  • 26
    • 0001674207 scopus 로고
    • Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soil and grass roots
    • Seldin L., van Elsas J.D., and Penido E.G.C. Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soil and grass roots. Int. J. Syst. Bacteriol. 34 (1984) 451-456
    • (1984) Int. J. Syst. Bacteriol. , vol.34 , pp. 451-456
    • Seldin, L.1    van Elsas, J.D.2    Penido, E.G.C.3
  • 27
    • 0344015774 scopus 로고    scopus 로고
    • Comparison of Paenibacillus azotofixans strains isolated from rhizoplane, rhizosphere, and non-root-associated soil from maize planted in two different Brazilian soils
    • Seldin L., Rosado A.S., da Cruz D.W., Nóbrega A., van Elsas J.D., and Paiva E. Comparison of Paenibacillus azotofixans strains isolated from rhizoplane, rhizosphere, and non-root-associated soil from maize planted in two different Brazilian soils. Appl. Environ. Microbiol. 64 (1998) 3860-3868
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3860-3868
    • Seldin, L.1    Rosado, A.S.2    da Cruz, D.W.3    Nóbrega, A.4    van Elsas, J.D.5    Paiva, E.6
  • 28
    • 0030999754 scopus 로고    scopus 로고
    • Tranfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus
    • Shida O., Takagi H., Kadowaki K., Nakamura L.K., and Komagata K. Tranfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int. J. Syst. Bacteriol. 47 (1997) 289-298
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 289-298
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Nakamura, L.K.4    Komagata, K.5
  • 29
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed
    • Smalla K., Wieland G., Buchner A., Zock A., Parzy J., Kaiser S., Roskot N., Heuer H., and Berg G. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67 (2001) 4742-4751
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 30
    • 9344239899 scopus 로고    scopus 로고
    • Rhizosphere bacterial signalling: a love parade beneath our feet
    • Somers E., Vanderleyden J., and Srinivasan M. Rhizosphere bacterial signalling: a love parade beneath our feet. Crit. Rev. Microbiol. 30 (2004) 205-240
    • (2004) Crit. Rev. Microbiol. , vol.30 , pp. 205-240
    • Somers, E.1    Vanderleyden, J.2    Srinivasan, M.3
  • 31
    • 0033230051 scopus 로고    scopus 로고
    • The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: a possible connection between biotic and abiotic stress responses
    • Timmusk S., and Wagner E.G.H. The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: a possible connection between biotic and abiotic stress responses. Mol. Plant Microbe Interact. 12 (1999) 951-959
    • (1999) Mol. Plant Microbe Interact. , vol.12 , pp. 951-959
    • Timmusk, S.1    Wagner, E.G.H.2
  • 32
    • 0033936566 scopus 로고    scopus 로고
    • Diversity of Paenibacillus polymyxa strains isolated form rhizosphere of maize planted in Cerrado soil
    • von der Weid I., Paiva E., Nóbrega A., van Elsas J.D., and Seldin L. Diversity of Paenibacillus polymyxa strains isolated form rhizosphere of maize planted in Cerrado soil. Res. Microbiol. 151 (2000) 369-381
    • (2000) Res. Microbiol. , vol.151 , pp. 369-381
    • von der Weid, I.1    Paiva, E.2    Nóbrega, A.3    van Elsas, J.D.4    Seldin, L.5
  • 33
    • 0032963157 scopus 로고    scopus 로고
    • Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice
    • Yamada S., Ohashi E., Agata N., and Venkateswaran K. Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice. Appl. Environ. Microbiol. 65 (1999) 1483-1490
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1483-1490
    • Yamada, S.1    Ohashi, E.2    Agata, N.3    Venkateswaran, K.4
  • 34
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto S., and Harayama S. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 61 (1995) 1104-1109
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2


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