Dynamics and diffusion in photosynthetic membranes from Rhodospirillum photometricum

Biophysical Journal

Volumn 91, Issue 10, 2006, Pages 3707-3717

  Scheuring, Simon ^a   Sturgis, James N ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLOROPHYLL; QUINONE DERIVATIVE;

ANTENNA; ARTICLE; ATOMIC FORCE MICROSCOPY; BACTERIAL MEMBRANE; ELECTRON TRANSPORT; MONTE CARLO METHOD; NONHUMAN; PHOTOTROPHIC BACTERIUM; RHODOSPIRILLUM; SIMULATION;

PROTEOBACTERIA; RHODOSPIRILLUM PHOTOMETRICUM;

EID: 33751257776     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.083709     Document Type: Article

References (47)

1. Hu, X., T. Ritz, A. Damjanovic, F. Autenrieth, and K. Schulten. 2002. Photosynthetic apparatus of purple bacteria. Q. Rev. Biophys. 35:1-62.
2. Binnig, G., C. F. Quate, and C. Gerber. 1986. Atomic force microscope. Phys. Rev. Lett. 56:930-933.
3. Bahatyrova, S., R. N. Frese, C. A. Siebert, J. D. Olsen, K. O. van der Werf, R. van Grondelle, R. A. Niederman, P. A. Bullough, and C. N. Hunter. 2004. The native architecture of a photosynthetic membrane. Nature. 430:1058-1062.
4. Gonçalves, R. P., A. Bernadac, J. N. Sturgis, and S. Scheuring. 2005. Architecture of the native photosynthetic apparatus of Phaeospirillum molischianum. J. Struct. Biol. 152:221-228.
5. Scheuring, S., J. Busselez, and D. Levy. 2005. Structure of the dimeric PufX-containing core complex of Rhodobacter blasticus by in situ AFM. J. Biol. Chem. 180:1426-1431.
6. Scheuring, S., R. P. Gonçalves, V. Prima, and J. N. Sturgis. 2006. The photosynthetic apparatus of Rhodopseudomonas palustris: structures and organization. J. Mol. Biol. 358:83-96.
7. Scheuring, S., J.-L. Rigaud, and J. N. Sturgis. 2004. Variable LH2 stoichiometry and core clustering in native membranes of Rhodospirillum photometricum. EMBO J. 23:4127-4133.
8. Scheuring, S., J. Seguin, S. Marco, D. Lévy, B. Robert, and J.-L. Rigaud. 2003. Nanodissection and high-resolution imaging of the Rhodopseudomonas viridis photosynthetic core-complex in native membranes by AFM. Proc. Natl. Acad. Sci. USA. 100:1690-1693.
9. Scheuring, S., and J. N. Sturgis. 2005. Chromatic adaptation of photosynthetic membranes. Science. 309:484-487.
10. Scheuring, S., J. N. Sturgis, V. Prima, A. Bernadac, D. Lévy, and J.-L. Rigaud. 2004. Watching the photosynthetic apparatus in native membranes. Proc. Natl. Acad. Sci. USA. 101:11293-11297.
11. Miller, K. R. 1979. Structure of a bacterial photosynthetic membrane. Proc. Natl. Acad. Sci. USA. 76:6415-6419.
12. Miller, K. R. 1982. Three-dimensional structure of a photosynthetic membrane. Nature. 300:53-55.
13. Miller, K. R., and J. S. Jacob. 1985. The Rhodopseudomonas viridis photosynthetic membrane: arrangement in situ. Arch. Microbiol. 142:333-339.
14. Jungas, C., J.-L. Ranck, J.-L. Rigaud, P. Joliot, and A. Vermeglio. 1999. Supramolecular organization of the photosynthetic apparatus of Rhodobacter sphaeroides. EMBO J. 18:534-542.
15. Scheuring, S., F. Francia, J. Busselez, B. Melandri, J.-L. Rigaud, and D. Lévy. 2004. Structural role of PufX in the dimerization of the photosynthetic core-complex of Rhodobacter sphaeroides. J. Biol. Chem. 279:3620-3626.
16. Qian, P., C. N. Hunter, and P. A. Bullough. 2005. The 8.5 Å projection structure of the core RC-LH1-PufX dimer of Rhodobacter sphaeroides. J. Mol. Biol. 349:948-960.
17. Frese, R. N., C. A. Siebert, R. A. Niederman, C. N. Hunter, C. Otto, and R. van Grondelle. 2004. The long-range organization of a native photosynthetic membrane. Proc. Natl. Acad. Sci. USA. 101:17994-17999.
18. Scheuring, S., D. Levy, and J.-L. Rigaud. 2005. Watching the components of photosynthetic bacterial membranes and their "in situ" organization by atomic force microscopy. Biochim. Biophys. Acta. 1712:109-127.
19. Hauss, T., S. Dante, T. H. Haines, and N. A. Dencher. 2005. Localization of coenzyme Q(10) in the center of a deuterated lipid membrane by neutron diffraction. Biochim. Biophys. Acta. 1710:57-62.
20. Joliot, P., A. Vermeglio, and A. Joliot. 1989. Evidence for super-complexes between reaction centers, cytochrome c2 and cytochrome bc1 complex in Rhodobacter sphaeroides whole cells. Biochim. Biophys. Acta. 975:336-345.
21. Comayras, F., C. Jungas, and J. Lavergne. 2005. Functional consequences of the organization of the photosynthetic apparatus in R. sphaeroides: 2. A study of PufX-membranes. J. Biol. Chem. 280:11214-11223.
22. Comayras, F., C. Jungas, and J. Lavergne. 2005. Functional consequences of the organization of the photosynthetic apparatus in R. sphaeroides: 1. Quinone domains and excitation transfer in chromatophores and reaction center-antenna complexes. J. Biol. Chem. 280:11203-11213.
23. Joliot, P., A. Joliot, and A. Vermeglio. 2005. Fast oxidation of the primary electron acceptor under anaerobic conditions requires the organization of the photosynthetic chain of Rhodobacter sphaeroides in supercomplexes. Biochim. Biophys. Acta. 1706:204-214.
24. Kirchhoff, H., S. Horstmann, and E. Weis. 2000. Control of the photosynthetic electron transport by PQ diffusion microdomains in thylakoids of higher plants. Biochim. Biophys. Acta. 1459:148-168.
25. Saffman, P. G., and M. Delbruck. 1975. Brownian motion in biological membranes. Proc. Natl. Acad. Sci. USA. 72:3111-3113.
26. Saxton, M. J. 1989. Lateral diffusion in an archipelago. Distance dependence of the diffusion coefficient. Biophys. J. 56:615-622.
27. Saxton, M. J. 1990. Lateral diffusion in a mixture of mobile and immobile particles. A Monte Carlo study. Biophys. J. 58:1303-1306.
28. Saxton, M. J. 1993. Lateral diffusion in an archipelago. Dependence on tracer size. Biophys. J. 64:1053-1062.
29. Saxton, M. J. 1993. Lateral diffusion in an archipelago. Single-particle diffusion. Biophys. J. 64:1766-1780.
30. Saxton, M. J. 1994. Anomalous diffusion due to obstacles: a Monte Carlo study. Biophys. J. 66:394-401.
31. Saxton, M. J. 2001. Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study. Biophys. J. 81:2226-2240.
32. Schram, V., J. F. Tocanne, and A. Lopez. 1994. Influence of obstacles on lipid lateral diffusion: computer simulation of FRAP experiments and application to proteoliposomes and biomembranes. Eur. Biophys. J. 23:337-348.
33. Tremmel, I. G., H. Kirchhoff, E. Weiss, and G. D. Farquhar. 2003. Dependence of plastoquinol diffusion on the shape, size and density of integral thylakoid proteins. Biochim. Biophys. Acta. 1607:97-109.
34. Kirchhoff, H., I. Tremmel, W. Haase, and U. Kubitscheck. 2004. Supramolecular photosystem II organisation in grana thylakoid membranes: evidence for a structured arrangement. Biochemistry. 43:9204-9213.
35. Kusumi, A., Y. Sako, and M. Yamamoto. 1993. Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells. Biophys. J. 65:2021-2040.
36. Ritchie, K., X. Y. Shan, J. Kondo, K. Iwasawa, T. Fujiwara, and A. Kusumi. 2005. Detection of non-Brownian diffusion in the cell membrane in single molecule tracking. Biophys. J. 88:2266-2277.
37. Tomishige, M., Y. Sako, and A. Kusumi. 1998. Regulation mechanism of the lateral diffusion of band 3 in erythrocyte membranes by the membrane skeleton. J. Cell Biol. 142:989-1000.
38. Wawrezinieck, L., H. Rigneault, D. Marguet, and P.-F. Lenne. 2005. Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization. Biophys. J. 89:4029-4042.
39. Schabert, F. A., and A. Engel. 1994. Reproducible acquisition of Escherichia coli porin surface topographs by atomic force microscopy. Biophys. J. 67:2394-2403.
40. Müller, D. J., A. Engel, U. Matthey, T. Meier, P. Dimroth, and K. Suda. 2003. Observing membrane protein diffusion at subnanometer resolution. J. Mol. Biol. 327:925-930.
41. McDermott, G., S. M. Prince, A. A. Freer, A. M. Hawthornthwaite-Lawless, M. Z. Papiz, R. J. Cogdell, and N. W. Isaacs. 1995. Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria. Nature. 374:517-521.
42. Jaster, A. 2004. The hexatic phase of the two-dimensional hard disk system. Phys. Lett. A. 330:120-125.
43. Minton, A. P. 1998. Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion. Methods Enzymol. 295:127-149.
44. Hunter, C. N., H. Bergstrom, R. van Grondelle, and V. Sundstrom. 1990. Energy-transfer dynamics in three light-harvesting mutants of Rhodobacter sphaeroides: a picosecond spectroscopy study. Biochem. 29:3203-3207.
45. Godik, V., K. Timpmann, A. Freiberg, and A. A. Moskalenko. 1993. Picosecond dynamics of excitations in light-harvesting complex B800-850 from Chromatium minutissimum studied using fluorescence spectrochronography. FEBS Lett. 327:68-70.
46. Schubert, A., A. Stenstam, W. J. D. Beenken, J. L. Harek, R. Cogdell, T. Pullerits, and V. Sundström. 2004. In vitro self assembly of the light harvesting pigment protein LH2 revealed by ultrafast spectroscopy and electron microscopy. Biophys. J. 86:2363-2373.
47. van Grondelle, R., and V. Novoderezhkin. 2001. Dynamics of excitation energy transfer in the LH1 and LH2 light-harvesting complexes of photosynthetic bacteria. Biochem. 40:15057-15068.