Dependence of plastoquinol diffusion on the shape, size, and density of integral thylakoid proteins

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1607, Issue 2-3, 2003, Pages 97-109

  Tremmel, I G ^a,b   Kirchhoff, H ^b   Weis, E ^b   Farquhar, G D ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

Diffusion; Microdomain; Monte Carlo simulation; Percolation; Plastoquinone; Thylakoid membrane

Indexed keywords

LIPID; PLASTOQUINONE; PROTEIN;

ARTICLE; BINDING SITE; CALCULATION; CONCENTRATION (PARAMETERS); DIFFUSION; DIFFUSION COEFFICIENT; IN VIVO STUDY; MATHEMATICAL ANALYSIS; MONTE CARLO METHOD; NONHUMAN; PERMEABILITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTEIN STRUCTURE; RANDOMIZATION; THEORY; THYLAKOID;

EID: 0345170107     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2003.09.004     Document Type: Article

References (64)

1. Andersson B., Anderson J.M. Lateral heterogeneity in the distribution of chlorophyll-protein complexes of the thylakoid membranes of spinach chloroplasts. Biochim. Biophys. Acta. 593:1980;427-440.
2. Anderson J.M. Insights into the consequences of grana stacking of thylakoid membranes in vascular plants: a personal perspective. Aust. J. Plant Physiol. 26:1999;625-639.
3. Staehelin L.A., DeWitt M. Correlation of structure and function of chloroplast membranes at the supramolecular level. J. Cell. Biochem. 24:1984;261-269.
4. Barber J. Surface electrical charges and protein phosphorylation. Encyclopedia of Plant Physiology, New Series. Photosynthesis III. 1986;653-664 Springer Verlag, Berlin.
5. Albertsson P.-Å. The structure and function of the chloroplast photosynthetic membrane - a model for the domain organization. Photosynth. Res. 46:1995;141-149.
6. Albertsson P.-Å. The domain structure and function of the thylakoid membrane. Recent Res. Dev. Bioenerg. 1:2000;143-171.
7. 6-f complex within chloroplast thylakoid membranes. Biochim. Biophys. Acta. 849:1986;94-103.
8. 6-f mutants. Biochim. Biophys. Acta. 851:1986;239-248.
9. Kirchhoff H., Mukherrjee U., Galla H.-J. Molecular architecture of the thylakoid membrane: lipid diffusion space for plastoquinone. Biochemistry. 41:2002;4872-4882.
10. Blackwell M.F., Gibas C., Gygax S., Roman D., Wagner B. The plastoquinone diffusion coefficient in chloroplasts and its mechanistic implications. Biochim. Biophys. Acta. 1183:1994;533-543.
11. Stauffer D., Aharony A. Introduction to Percolation Theory. 1992;Taylor and Francis, London.
12. Feder J. Fractals. 1988;Plenum, New York.
13. Lavergne J., Joliot P. Restricted diffusion in photosynthetic membranes. TIBS. 16:1991;129-134.
14. Joliot P., Lavergne J., Béal D. Plastoquinone compartmentation in chloroplasts: I. Evidencefor domains with different rates of photo-reduction. Biochim. Biophys. Acta. 1101:1992;1-12.
15. Lavergne J., Bouchaud J.-P., Joliot P. Plastoquinone compartmentation in chloroplasts: II. Theoretical aspects. Biochim. Biophys. Acta. 1101:1992;13-22.
16. Joliot P., Joliot A. Electron transfer between photosystem II and the cytochrome bf complex: mechanistic and structural implications. Biochim. Biophys. Acta. 1102:1992;53-61.
17. Kirchhoff H., Horstmann S., Weis E. Control of the photosynthetic electron transport by PQ diffusion microdomains in thylakoids of higher plants. Biochim. Biophys. Acta, Bioenerg. 1459(1):2000;148-168.
18. Metropolis N., Rosenbluth A.W., Rosenbluth M.N., Teller A.H. Equation of state calculations by fast computing machines. J. Chem. Phys. 21(6):1953;1087-1092.
19. Saxton M.J. Lateral diffusion in an archipelago. The effect of mobile obstacles. Biophys. J. 52:1987;989-997.
20. Saxton M.J. Lateral diffusion in an archipelago. Distance dependence of the diffusion coefficient. Biophys. J. 56:1989;615-622.
21. Mitchell R., Spillmann A., Haehnel W. Plastoquinol diffusion in linear photosynthetic electron transport. Biophys. J. 58:1990;1011-1024.
22. Drepper F., Carlberg I., Andersson B., Haehnel W. Lateral diffusion of an integral membrane protein: Monte Carlo analysis of the migration of phosphorylated light-harvesting complex II in the thylakoid membrane. Biochemistry. 32:1993;11915-11922.
23. Heimburg T. Monte Carlo simulations of lipid bilayers and lipid protein interactions in the light of recent experiment. Curr. Opin. Colloid Interface Sci. 5:2000;225-232.
24. Hankammer B., Barber J., Boekema E.J. Structure and membrane organization of photosystem II in green plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48:1997;641-671.
25. 6f complex induced by inhibitor binding. J. Biol. Chem. 275:2000;13195-13201.
26. Kühlbrandt W., Wang D.N. Three-dimensional structure of plant light-harvesting complex determined by electron crystallography. Nature. 350:1991;130-134.
27. Einstein A. Zur Theorie der Brownschen Bewegung. Ann. Phys. 19:1906;371-381.
28. Einstein A. Investigations on the Theory of the Brownian Movement. 1956;Dover Publications, New York.
29. L'Ecuyer P. Efficient and portable combined random number generators. Commun. ACM. 31:1988;742-774.
30. Press W.H., Flannery B.P., Teukolsky S.A., Vetterling W.T. Numerical recipes in C. The Art of Scientific Computing. 2nd ed. 1992;275-286 Cambridge Univ. Press, Cambridge. Ch. 7.1.
31. Blackwell M.F., Gounaris K., Zara S.J., Barber J. A method for estimating lateral diffusion coefficients in membranes from steady-state fluorescence quenching studies. Biophys. J. 51:1987;735-744.
32. Saxton M.J. Lateral diffusion in an archipelago. Dependence on tracer size. Biophys. J. 64:1993;1053-1062.
33. Almeida P.F.F., Vaz W.L.C. Handbook of biological physics. Lateral Diffusion in Membranes. 1995;305-357 Elsevier, Amsterdam. Ch. 6.
34. Vaz W.L.C., Almeida P.F.F. Phase topology and percolation in multi-phase lipid bilayers: is the biological membrane a domain mosaic? Curr. Opin. Struct. Biol. 3:1993;482-488.
35. Marcelja S. Towards a realistic theory of the interaction of membrane inclusions. Biophys. J. 76:1999;593-594.
36. Yu S.-G., Björn G., Albertson P.-A. Characterization of a non-detergent PSII- cytochrome bf preparation (bs). Photosynth. Res. 37:1993;227-236.
37. McCauley S.W., Melis A. Quantification of photosystem II in spinach thylakoids. Biochim. Biophys. Acta. 849:1986;175-182.
38. Janson S. The light-harvesting chlorophyll a/b binding proteins. Biochim. Biophys. Acta. 1184:1994;1-19.
39. Kühlbrandt W., Wang D.N., Fujiyoshi Y. Atomic model of plant light-harvesting complex by electron crystallography. Nature. 367:1994;614-621.
40. Duchene S., Siegenthaler P.A. Do glycerolipids display lateral heterogeneity in the thylakoid membrane? Lipids. 35(7):2000;739-744.
41. Thomson T.E., Sankaram M.B., Biltonen R.L., Marsh D., Vaz W.L.C. Effects of domain structure on in-plane reactions and interactions. Mol. Membr. Biol. 12:1995;157-162.
42. Vaz W.L.C. Translational diffusion in phase-separated lipid bilayer membranes. Comments Mol. Cell. Biophys. 8:1992;17-36.
43. Vaz W.L.C. Diffusion and chemical reactions in phase-separated membranes. Biophys. Chem. 50:1994;139-145.
44. Saxton M.J. Lateral diffusion in an archipelago. The effect of impermeable patches on diffusion in a cell membrane. Biophys. J. 39:1982;165-173.
45. Ivancich A., Horwáth L.I., Droppa M., Horwáth G., Farkas T. Spin label ESR study of lipid solvation of supramolecular photosynthetic protein complexes in thylakoids. Biochim. Biophys. Acta. 1196:1994;51-56.
46. Pink D.A. Protein lateral movement in lipid bilayers. Simulation studies of its dependence upon protein concentration. Biochim. Biophys. Acta. 818:1985;200-204.
47. Gupte S., Wu E.-S., Hoechli L., Hoechli M., Jacobson K., Sowers A., Hackenbrock C.R. Relationship between lateral diffusion, collision frequency, and electron transfer of mitochondrial inner membrane oxidation-reduction components. Proc. Natl. Acad. Sci. 81:1984;2606-2610.
48. Eisinger J., Flores J., Petersen W.P. A milling crowd model for local and long-range obstructed lateral diffusion. Biophys. J. 49:1986;987-1001.
49. Williams W.P. The physical properties of thylakoid membrane lipids and their relation to photosynthesis. Lipids in Photosynthesis: Structure, Function and Genetics. 1998;103-118 Kluwer Academic Publishing, Dordrecht.
50. Chow W.S. Grana formation: entropy-assisted local order in chloroplasts. Aust. J. Plant Physiol. 26:1999;641-647.
51. Joliot P., Verméglio A., Joliot A. Supramolecular membrane protein assemblies in photosynthesis and respiration. Biochim. Biophys. Acta. 1141:1993;151-174.
52. Boekema E.J., van Breemen J.F.L., van Roon H., Dekker J.P. Arrangement of photosystem II supercomplexes in crystalline macrodomains within the thylakoid membrane of green plant chloroplasts. J. Mol. Biol. 301:2000;1123-1133.
53. Yakushevska A.E., Jensen P.E., Keegstra W., van Roon H., Scheller H.V., Boekema E.J., Dekker J.P. Supermolecular organization of photosystem II and its associated light-harvesting antenna in Arabidopsis thaliana. Eur. J. Biochem. 268:2001;6020-6028.
54. Ellis R.J. Macromolecular crowding: obvious but underappreciated. Trends Biochem. Sci. 26:2001;597-604.
55. Minton A.P. The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media. J. Biol. Chem. 276(14):2001;10577-10580.
56. Xia W., Thorpe M.F. Percolation properties of random ellipses. Phys. Rev., A. 38:1988;2650.
57. Simidijev I., Stoylova S., Holzenburg A., Amenitsch H., Laggner P., Jávorfi T., Mustárdy L., Garab G. Reconstitution of membranes using non-bilayer forming lipids and plant LHC II. Photosynthesis: Mechanisms and Effects. 1998;1799-1803 Kluwer Academic Publishing, Dordrecht.
58. Webb M.S., Green B.R. Biochemical and biophysical properties of thylakoid acyl lipids. Biochim. Biophys. Acta. 1060:1991;133-158.
59. Kruse O., Hankamer B., Konczak C., Gerle C., Morris E., Radunz A., Schmid G.H., Barber J. Phosphatidylglycerol is involved in the dimerization of photosystem II. J. Biol. Chem. 275:2000;6509-6514.
60. Shinitzky M. Biomembranes, Physical Aspects. 1993;VCH Verlagsgesellschaft, Weinheim.
61. Anderson J.M., Chow W.S., Goodchild D.J. Thylakoid membrane organisation in sun/shade acclimation. Aust. J. Plant Physiol. 15:1988;11-26.
62. Andersson B., Styring S. Photosystem II: molecular organization, function and acclimation. Curr. Top. Bioenerg. 16:1991;1-81.
63. Ediger M.D., Angell C.A., Nagel S.R. Supercooled liquids and glasses. J. Phys. Chem. 100:1996;13200-13212.
64. Weeks E.R., Weis D.A. Subdiffusion and the cage effect studied near the colloidal glass transition. Chem. Phys. 284:2002;361-367.