OGSA-DAI and bioinformatics grids: Challenges, experience and strategies

Sixth IEEE International Symposium on Cluster Computing and the Grid, 2006. CCGRID 06

Volumn , Issue , 2006, Pages 193-200

  Crompton, S Y ^a   Matthews, B M ^b   Gray, W A ^c   Jones, A C ^c   White, R J ^c   Pahwa, J S ^c  

^a DARESBURY LABORATORY   (United Kingdom)

^b RUTHERFORD APPLETON LABORATORY   (United Kingdom)

^c CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL COMPLEXITY; MIDDLEWARE; PROBLEM SOLVING; PROJECT MANAGEMENT; RESOURCE ALLOCATION;

BIOINFORMATICS; GRID APPLICATIONS; HETEROGENEOUS DATA RESOURCES;

DISTRIBUTED COMPUTER SYSTEMS;

EID: 33751103696     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGRID.2006.75     Document Type: Conference Paper

References (20)

1. BioDA web site [http://isegserv.itd.rl.ac.uk/BioDA/pages/default.htm].
2. M. Antonioletti, M. Atkinson, R. Baxter, A. Borley, N. Chue Hong, B. Collins, N. Hardman, A. Hume, A. Knox, M. Jackson, A. Krause, S. Laws, J. Magowan, N.W. Paton, D. Pearson, T. Sugden, P. Watson, and M. Westhead, "The Design and Implementation of Grid Database Services in OGSA-DAI", Concurrency and Computation: Practice and Experience, 2005, Vol. 17, pp. 357-376.
3. R.J. White, F.A. Bisby, N. Caithness, T. Sutton, P. Brewer, P. Williams, A. Culham, M. Scoble, A.C. Jones, W.A. Gray, N.J. Fiddian, N. Pittas, X. Xu, O. Bromley, and P. Valdes, "The Biodiversity World Environment as an Extensible Virtual Laboratory for Analysing Biodiversity Patterns", Proceedings of the Second UK e-Science All Hands Meeting, September 2003, pp. 341-344.
4. P. Watson, "Databases in Grid Applications: Locality and Distribution," Proceedings of the Database: Enterprise, Skills and Innovation. 22nd British National Conference on Databases, July 2005, pp. 1-16.
5. K. Qi, "Data Integration Scenarios in OGSA-DAF', MSc dissertation., The University of Edinburgh, 2004.
6. M. Antonioletti, M. Atkinson, A. Borley, N. Chue Hong, B. Collins, J. Davies, N. Hardman, A. Hume, M. Jackson, A. Krause, S. Laws, N. Paton, K. Qi, T. Sugden, D. Vyvyan, P. Watson, and M. Westhead, "OGSA-DAI Usage Scenarios and Behaviour: Determining Good Practice", Proceedings of the Third UK e-Science All Hands Meeting, September 2004, pp. 818-823.
7. M.J. Jackson, A.D. Lloyd, and T.M. Sloan, "Enabling Access to Federated Grid Databases: An OGSA-DAI ODBC Driver", Proceedings of the Fourth UK e-Science All Hands Meeting, September 2005, pp. 951-957.
8. S.Y. Crompton, A. Gray, B.M. Matthews, A.W. Jones, and R.J. White, "Bioinformatics and OGSA-DAI (BioDA) Final Report", 2005 [http://isegserv.itd.rl.ac.uk/BioDA/documents/BioDA_finalRepl_2.pdf]
9. P. Watson, "Databases and the GRID", in GRID Computing: Making the Global Infrastructure a Reality, F. Berman, G. Fox and A.J.G. Hey, Eds. New YorkWiley, 2003, pp. 1-16.
10. B. Eckman, Z. Lacroix, and L. Raschild, "Optimised Seamless Integration of Biomolecular Data", IEEE International Conference on Bioinformatics and Biomedical Engineering, 2001, pp. 23-32.
11. M. N. Alpdemir, A. Mukherjee, N.W. Paton, P.Watson, A. A. Fernandes, A. Gounaris, and J. Smith, "Service-based distributed querying on the grid", Proceedings of the First International Conference on Service Oriented Computing, 2003, pp. 467-482.
12. A. Woehrer, P. Brezany, and I. Janciak, "Virtualization of Heterogeneous Data Sources for Grid Information Systems", Proceedings of MIPRO 2004, to be published.
13. M. Maibaum, L. Zamboulis, G. Rimon, C. Orengo, N. Martin, and A. Poulovassilis, "Cluster based Integration of Heterogeneous Biological Databases using the AutoMed toolkit", Proceedings of DILS'05, to be published.
14. A. Lee, J. Magowan, P. Dantressangle, and F. Bannwart, "Bridging the Integration Gap, Part 1: Federating Grid Data", IBM Developer Works. [http://www128.ibm.eom/developerworks/grid/library/gr-feddata/].
15. M. Antonioletti, M. Atkinson, R. Baxter, A. Borley, N. Chue Hong, P. Dantressangle, A.C. Hume, M. Jackson, A. Krause, S. Laws, M. Parsons, N.W. Paton, J..M. Schopf, T. Sugden, P. Watson, and D. Vyvyan, "OGSA-DAI Status and Benchmarks", Proceedings of the Fourth UK e-Science All Hands Meeting, September 2005, pp. 943-950.
16. J.S. Pahwa, P. Brewer, C. Yesson, T. Sutton, M. Burgess, X. Xu, R.J. White, A.C. Jones, W.A. Gray, N.J. Fiddian, F.A. Bisby, A. Culham, N. Caithness, M. Scoble, P. Williams, and S. Bhagwat, "Biodiversity World: A Problem-Solving Environment for Analysing Biodiversity Patterns", CCGrid'06, May 2006, to be published.
17. I. Kojima, and S.M. Pahlevi, "OGSA-WebDB: An OGSA-based System for Bringing Web Databases into the Grid", IEEE International Conference on Information Technology: Coding and Computing (ITTC 2004), April 2004, pp. 105-110.
18. M. Jackson, M. Antonioletti, N. Chue Hong, A. Hume, A. Krause, and T. Sugden, "Performance Analysis of the OGSA-DAI Software", Proceedings of the Third UK e-Science All Hands Meeting, September 2004, pp. 340-347.
19. Yukato Tohasato, Takahiro Kosaka, Susumu Date, Shinji Shimojo, and Hideo Matsuda, "Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process", LSGRID 2004 Lecture Notes in Bioinformatics, 2005, vol. 3370, pp. 43-52.
20. SDSC Storage Resource Broker web site [http://www.sdsc.edu/srb/]