Biodiversity world: A problem-solving environment for analysing biodiversity patterns

Sixth IEEE International Symposium on Cluster Computing and the Grid, 2006. CCGRID 06

Volumn , Issue , 2006, Pages 201-208

  Pahwa, J S ^a   Brewer, P ^b   Sutton, T ^b   Yesson, C ^b   Burgess, M ^a   Xu, X ^a   Jones, A C ^a   White, R J ^a   Gray, W A ^a   Fiddian, N J ^a   Bisby, F A ^b   Culham, A ^b   Caithness, N ^b   Scoble, M ^c   Williams, P ^c   Bhagwat, S ^c  

^a CARDIFF UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF READING   (United Kingdom)

^c DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER ARCHITECTURE; COMPUTER SIMULATION; INFORMATION SERVICES; INTEROPERABILITY; PATTERN RECOGNITION; PROBLEM SOLVING;

ANALYTICAL TOOLS; DATA SOURCES; GEOGRAPHICAL DISTRIBUTION;

BIODIVERSITY;

EID: 33751101621     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGRID.2006.23     Document Type: Conference Paper

References (32)

1. D. Maier, E. Landis, J. Cushing, A. Frondorf, and A. Silberschatz, "Research Directions in Biodiversity and Ecosystem Informatics," in Report of an NSF, USGS, NASA Workshop on Biodiversity and Ecosystem Informatics, J. L. Schnase, Ed., NASA Goddard Space Fight Center, Greenbelt, Maryland, June 22-23, 2001.
2. I.Taylor, M.Shields, I.Wang, and R.Philp, "Grid Enabling Applications using Triana," in Workshop on Grid Applications and Programming Tools, Seattle, USA, 2003. [Online]. Available: http://users.cs. cardiff.ac.uk/Ian.J.Taylor/CV/Papers/GAPT.2003.pdf
3. A. C. Jones, R. J. White, W. A. Gray, F. A. Bisby, N. Caithness, N. Pittas, X. Xu, T. Sutton, N. J. Fiddian, A. Culham, M. Scoble, P. Williams, O. Bromley, P. Brewer, C. Yesson, and S. Bhagwat, "Building a Biodiversity GRID," in Grid Computing in Life Science: First International Workshop on Life Science Grid, Revised selected and invited papers (LNCS/LNBI 3370). Kanazawa, Japan: Springer-Verlag, 2004.
4. A. C. Jones, X. Xu, N. Pittas, W. A. Gray, N. J. Fiddian, R. J. White, J. S. Robinson, F. A. Bisby, and S. M. Brandt, "SPICE: A Flexible Architecture for Integrating Autonomous Databases to Comprise a Distributed Catalogue of Life," in Proc. 11th International Conference on Database and Expert Systems Applications. London, UK: Springer-Verlag, 2000.
5. P. Williams. (2006) Biodiversity and WorldMap. [Online]. Available: http://www.nhm.ac.uk/research-curation/projects/worldmap/index.html
6. (2003) The Canadian Biodiversity Information Facility Portal. [Online]. Available: http://www.cbif.gc.ca/portal/digir-toc.php
7. (2006) The European Bioinformatics Institute Website. [Online]. Available: http://www.ebi.ac.uk/
8. D. L. Swofford, "PAUP*: Phylogenetic Analysis Using Parsimony (* and other methods), Version 4.0 b10." in Sinauer, Sunderland, Massachusetts.
9. M. J. Sanderson, "r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock," Bioinformatics, vol. 19, pp. 301-302, 2003.
10. (2006) The openModeller. [Online]. Available: http://openmodeller. sourceforge.net/
11. (2006) The GBIF portal. [Online]. Available: http://www.gbif.org/
12. (2006) The Australia's Virtual Herbarium Website. [Online]. Available: http://www.chah.gov.au/avh/avh.html
13. (2005) The Apache Web Services Project. [Online]. Available: http://ws.apache.org/axis/
14. S. Graham, S. Simeonov, T. Boubez, G. Daniels, D. Davis, Y. Nakamura, and R. Neyama, Building Web Services with Java: Making sense of XML, SOAP, WSDL, and UDDI. Sams Publishing, 2002.
15. K. Czajkowski, D. Ferguson, I. Foster, J. Frey, S. Graham, T. Maguire, D. Snelling, and S. Tuecke. (2004) From Open Grid Services Infrastructure to WS-Resource Framework: Refactoring & Evolution. [Online]. Available: http://www.globus.org/wsrf/specs/ogsi_to_wsrf_1.0.pdf
16. J. H. Gennari, M. A. Musen, R. W. Fergerson, W. E. Grosso, M. Crubézy, H. Eriksson, N. F. Noy, and S. W. Tu, "The evolution of Protégé: an environment for knowledge-based systems development," International Journal of Human-Computer Studies, vol. 58.
17. B. McBride, "Jena: A Semantic Web Toolkit," IEEE Internet Computing, vol. 6.
18. D. Stockwell and D. Peters, "The GARP modelling system: Problems and solutions to automated spatial prediction," International Journal of Information Science, vol. 13, pp. 143-158, 1999.
19. H. A. Nix, "A biogeographic analysis of australian elapid snakes," in Australian Flora and Fauna Series Number 7, R. Longmore, Ed. Canberra: Australian Government Publishing Service, 1986, pp. 4-15.
20. M. P. Robertson, N. Caithness, and M. H. Villet, "A PCA-based modelling technique for predicting environmental suitability for organisms from presence records," Diversity and Distributions, vol. 7, pp. 15-27, 2001.
21. C. Gordon, C. Cooper, C. A. Senior, H. Banks, J. M. Gregory, T. C. Johns, J. F. Mitchell, and R. A. Wood, "The Simulation of SST, Sea Ice Extents and Ocean Heat Transports in aversion of the Hadley Centre Coupled Model without Flux Adjustments," Climate Dynamics, vol. 16, pp. 147-168, 2000.
22. C. Goble, C. Wroe, and R. Stevens, "The myGrid project: services, architecture and demonstrator," in Proc. UK e-Science All Hands Meeting 2003 (AHM'03), Nottingham, UK, Sept. 2003. [Online]. Available: http://www.nesc.ac.uk/events/ahm2003/AHMCD/pdf/128.pdf
23. P. Jithesh, N. Kelly, S. Wasnik, P. Donachy, T. Harmer, R. Perrott, M. McCurley, M. Townsley, J. Johnston, and S. McKee, "Bioinformatics Application Integration in GeneGrid," in Proc. UK e-Science All Hands Meeting 2005 (AHM'05), Nottingham, UK, Sept. 2005. [Online]. Available: http://www.allhands.org.uk/2005/proceedings/papers/335.pdf
24. T. B. Kirkwood, R. J. Boys, C. S. Gillespie, C. J. Proctor, D. P. Shanley, and D. J. Wilkinson, "Towards an E-Biology of Ageing: Integrating Theory and Data," Nature Reviews Molecular Cell Biology, vol. 4, pp. 243-249, 2003.
25. W. A.Gray and C.Thompson, "Bioinformatics and eScience," in Proc. UK e-Science All Hands Meeting 2003 (AHM'03), Nottingham, UK, Sept. 2003. [Online]. Available: http://www.nesc.ac.uk/events/ahm2003/AHMCD/pdf/015.pdf
26. (2006) The SEEK Project Proposal. [Online]. Available: http: //seek.ecoinformatics.org/Wiki.jsp?page=SEEKProjectProposal
27. S.Y.Crompton, B.M.Matthews, W.A.Gray, A.C.Jones, R.J.White, and J.S.Pahwa, "OGSA-DAI and Bioinformatics Grids: Challenges, Experience and Strategies," in Proc. 6th IEEE International Symposium on Cluster Computing and the Grid (CCGRID 2006), Singapore, May 16-19, 2006.
28. M. Antonioletti, M. Atkinson, R. Baxter, A. Borley, N. C. Hong, B. Collins, N. Hardman, A. Hume, A. Knox, M. Jackson, A. Krause, S. Laws, J. Magowan, N. Paton, D. Pearson, T. Sugden, P. Watson, and M. Westhead, "The Design and Implementation of Grid Database Services in OGSA-DAI," Concurrency and Computation: Practice and Experience, vol. 17, pp. 357-376, 2005.
29. (2006) The Shibboleth Project - Internet2 Middleware. [Online]. Available: http://shibboleth.internet2.edu/
30. I. Foster, "Globus Toolkit Version 4: Software for Service-Oriented Systems," in IFIP International Conference on Network and Parallel Computing. Springer-Verlag LNCS 3779, 2005.
31. (2006) The Ganglia Monitoring System. [Online]. Available: http://ganglia.sourceforge.net/
32. D. Thain, T. Tannenbaum, and M. Livny, "Distributed Computing in Practice: The Condor Experience," Concurrency and Computation: Practice and Experience, vol. 17, no. 2-4, pp. 323-356, 2005.