Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm

Planta

Volumn 225, Issue 1, 2006, Pages 75-87

  Utsumi, Yoshinori ^a   Nakamura, Yasunori ^a,b  

^a AKITA PREFECTURAL UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Amylopectin; Isoamylase; Rice; Starch; Starch debranching enzyme

Indexed keywords

AMYLOPECTIN; GLYCOSIDASE; ISOAMYLASE; ISOENZYME; PULLULANASE; STARCH; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; DIMERIZATION; ENZYMOLOGY; GEL CHROMATOGRAPHY; GENETICS; GENOME; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HYDROLYSIS; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; PH; PLANT SEED; PROTEIN BINDING; RICE; TEMPERATURE; TRANSGENIC PLANT; WESTERN BLOTTING;

AMINO ACID SEQUENCE; AMYLOPECTIN; BLOTTING, WESTERN; CHROMATOGRAPHY, GEL; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DIMERIZATION; GENOME, PLANT; GLYCOSIDE HYDROLASES; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; ISOAMYLASE; ISOENZYMES; KINETICS; ORYZA SATIVA; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEIN BINDING; SEEDS; STARCH; TEMPERATURE;

ESCHERICHIA COLI;

EID: 33750967078     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-006-0331-z     Document Type: Article

References (36)

1. Ball SG, Morell MK (2003) From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule. Annu Rev Plant Biol 54:207-233
2. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
3. Burton RA, Jenner H, Carrangis L, Fahy B, Fincher GB, Hylton C, Laurie DA, Parker M, Waite D, Wegen SV, Verhoeven T, Denyer K (2002) Starch granule initiation and growth are altered in barley mutants that lack isoamylase activity. Plant J 31:97-112
4. Bustos R, Fahy B, Hylton CM, Seale R, Nebane NM, Edwards A, Martin C, Smith AM (2004) Starch granule initiation is controlled by a heteromultimeric isoamylase in potato tubers. Proc Natl Acad Sci USA 101(2004) 2215-2220
5. Dauvillée D, Mestre V, Colleoni C, Slomianny MC, Mouille G, Delrue B, d'Hulst C, Bliard C, Nuzillard JM, Ball S (2000) The debranching enzyme complex missing in glycogen accumulating mutants of Chlamydomonas reinhardtii displays an isoamylase-type specificity. Plant Sci 22:145-156
6. Dauvillée D, Colleoni C, Mouille G, Buléon A, Gallant DJ, Bouchet B, Morell MK, d'Hulst C, Myers AM, Ball SG (2001a) Two loci control phytoglycogen production in the monocellular green alga Chlamydomonas reinhardtii. Plant Physiol 125:1710-1722
7. Dauvillée D, Colleoni C, Mouille G, Morell MK, d'Hulst C, Wattebled F, Liénard L, Delvallé D, Ral JP, Myers AM, Ball SG (2001b) Biochemical characterization of wild-type and mutant isoamylases of Chlamydomonas reinhardtii supports a function of the multimeric enzyme organization in amylopectin maturation. Plant Physiol 125:1723-1731
8. Delatte T, Trevisan M, Parker ML, Zeeman SC (2005) Arabidopsis mutants Atisa1 and Atisa2 have identical phenotypes and lack the same multimeric isoamylase, which influences the branch point distribution of amylopectin during starch synthesis. Plant J 41:815-830
9. Dinges JR, Colleoni C, James MG, Myers AM (2003) Mutational analysis of the pullulanase-type debranching enzyme of maize indicates multiple functions in starch metabolism. Plant Cell 15:666-680
10. Doehlert DC, Knutson CA (1991) Two classes of starch debranching enzymes from developing maize kernels. J Plant Physiol 138:566-572
11. Fox JD, Robyt JF (1991) Miniaturization of three carbohydrate analyses using a microsample plate reader. Anal Biochem 195:93-96
12. Fujita N, Kubo A, Francisco PB, Nakakita M, Harada K, Minaka N, Nakamura Y (1999) Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice. Planta 208:283-293
13. Fujita N, Kubo A, Suh DS, Wong KS, Jane JL, Ozawa K, Takaiwa F, Inaba Y, Nakamura Y (2003) Antisense inhibition of isoamylase alters the structure of amylopectin and the physicochemical properties of starch in rice endospermn. Plant Cell Physiol 44:607-618
14. Hizukuri S (1986) Polymodal distribution of the chain lengths of amylopectins, and its significance. Carbohydr Res 147:342-347
15. Hussain H, Mant A, Seals R, Zeeman S, Hinchliffe E, Edwards A, Hylton C, Bornemann S, Smith AM, Martin C, Bustos R (2003) Three isoforms of isoamylase contribute different catalytic properties for the debranching of potato glucans. Plant Cell 15:133-149
16. Ishizaki Y, Taniguchi H, Maruyama Y, Nakamura M (1983) Debranching enzymes of potato tubers (Solanum tuberosum L.). I. Purification and some properties of potato isoamylase. Agric Biol Chem 47:771-779
17. James MG, Robertson DS, Myers AM (1995) Characterization of the maize gene sugary1, a determinant of starch composition in kernels. Plant Cell 7:417-429
18. Kubo A, Fujita N, Harada K, Matsuda T, Satoh H, Nakamura Y (1999) The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol 121:399-409
19. Kubo A, Raman S, Utsumi Y, Li Z, Mukai Y, Yamamoto M, Ugaki M, Harada K, Satoh H, Konik-Rose C, Morell M, Nakamura Y (2005) Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis. Plant Physiol 137:43-56
20. Lee EY, Whelan WJ (1971) Glycogen and starch debranching enzymes. In: Boyer PD (ed) The enzymes, vol 5. Academic, New York, pp 191-234
21. MacGregor EA (1993) Relationships between structure and activity in the α-amylase family of starch-metabolising enzymes. Starch 45:232-237
22. Mouille G, Maddelein ML, Libessart N, Talaga P, Decq A, Delrue B, Ball SG (1996) Preamylopectin processing: a mandatory step for starch biosynthesis in plants. Plant Cell 8:1353-1366
23. Myers AM, Morell MK, James MG, Ball SG (2000) Recent progress toward understanding biosynthesis of the amylopectin crystal. Plant Physiol 122:989-999
24. Nakamura Y (1996) Some properties of starch debranching enzymes and their possible role in amylopectin biosynthesis. Plant Sci 121:1-18
25. Nakamura Y (2002) Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: rice endosperm as a model tissue. Plant Cell Physiol 43:718-725
26. Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y (2005) Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J Exp Bot 56:3229-3244
27. O'Shea MG, Morell MK (1996) High resolution slab gel electrophoresis of 8-amino-1, 3, 6-pyrenetrisulfonic acid (APTS) tagged oligosaccharides using a DNA sequencer. Electrophoresis 17:681-688
28. Pan D, Nelson OE (1984) A debranching enzyme deficiency in endosperms of the sugary-1 mutants of maize. Plant Physiol 74:324-328
29. Rahman A, Wong KS, Jane JL, Myers AM, James MG (1998) Characterization of SU1 isoamylase, a determinant of storage starch structure in maize. Plant Physiol 117:425-435
30. Satoh H, Nishi A, Fujita N, Kubo A, Nakamura Y, Kawasaki T, Okita TW (2003) Isolation and characterization of starch mutants in rice. J Appl Glycosci 50:225-230
31. Takeda Y, Hizukuri S, Juliano BO (1986) Purification and structure of amylose from rice starch. Carbohydr Res 148:299-308
32. Wattebled F, Dong Y, Dumez S, Delvalle D, Planchot V, Berbezy P, Vyas D, Colonna P, Chatterjee M, Ball S, D'Hulst C (2005) Mutants of Arabidopsis lacking a chloroplastic isoamylase accumulate phytoglycogen and an abnormal form of amylopectin. Plant Physiol 138:184-195
33. Wong K, Kubo A, Jane J, Harada K, Satoh H, Nakamura Y (2003) Structures and properties of amylopectin and phytoglycogen in the endosperm of sugary-1 mutants of rice. J Cereal Sci 37:139-149
34. Yoo SH, Jane JL (2002) Molecular weight and gyration radii of amylopectins determined by high-performance size-exclusion chromatography equipped with multi-angle laser-light scattering and refractive index detector. Carbohydr Polym 49:307-314
35. Zeeman SC, Umemoto T, Lue WL, Au-Yeung P, Martin C, Smith AM, Chen J (1998) A mutant of arabidopsis lacking a chloroplastic isoamylase accumulates both starch and phytoglycogen. Plant Cell 10:1699-1712
36. Zhu ZP, Hylton CM, Rössner U, Smith AM (1998) Characterization of starch-debranching enzymes in pea embryos. Plant Physiol 118:581-590