Analysis of multiple tissue-specific cDNA libraries from the Pacific whiteleg shrimp, Litopenaeus vannamei

Integrative and Comparative Biology

Volumn 46, Issue 6, 2006, Pages 931-939

  O'Leary, Nuala A ^a   Trent III, Harold F ^b   Robalino, Javier ^b   Peck, Megan E T ^b   McKillen, David J ^b   Gross, Paul S ^a,b  

^a MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

^b MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI; PENAEIDAE;

EID: 33750956183     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/icl006     Document Type: Conference Paper

References (20)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215(3):403-10.
2. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, and others. 2000. Gene ontology: Tool for the unification of biology. The gene ontology consortium. Nat Genet 25(1):25-9.
3. Bachere E, Gueguen Y, Gonzalez M, de Lorgeril J, Garnier J, Romestand B. 2004. Insights into the anti-microbial defense of marine invertebrates: The penaeid shrimps and the oyster Crassostrea gigas. Immunol Rev 198:149-68.
4. Burgents JE, Burnett KG, Burnett LE. 2003. Disease resistance of pacific white shrimp, Litopenaeus vannamei, following the dietary administration of a yeast culture food supplement. Aquaculture 231:1-8.
5. Chapman RW, Robalino J, Trent H. 2006. EcoGenomics: Analysis of complex systems. Integr Comp Biol 46:902-911.
6. Chen T, Amons R, Clegg JS, Warner AH, MacRae TH. 2003. Molecular characterization of artemin and ferritin from Artemia franciscana. Eur J Biochem 270(1):137-45.
7. Colbourne JK, Singan VR, Gilbert DG. 2005. Wfleabase: The Daphnia genome database. BMC Bioinformatics 6(1):45.
8. Gross PS, Bartlett TC, Browdy CL, Chapman RW, Warr GW. 2001. Immune gene discovery by expressed sequence tag analysis of hemocytes and hepatopancreas in the pacific white shrimp, Litopenaeus vannamei, and the Atlantic white shrimp, L. setiferus. Dev Comp Immunol 25(7):565-77.
9. Johnson HM. 2004. 2004 Annual report of the United States seafood industry. Jacksonville, OR: H.M. Johnson & Associates.
10. Lee YM, Kim IC, Jung SO, Lee JS. 2005. Analysis of 686 expressed sequence tags (ESTs) from the intertidal harpacticoid copepod Tigriopus japonicus (crustacea, copepoda). Mar Pollut Bull 51(8-12):757-68.
11. Lehnert SA, Wilson KJ, Byrne K, Moore SS. 1999. Tissue-specific expressed sequence tags from the black tiger shrimp Penaeus monodon. Mar Biotechnol 1(5):465-76.
12. McKillen DJ, Chen YA, Chen C, Jenny MJ, Trent HF III, Robalino J, McLean DC Jr, Gross PS, Chapman RW, Warr GW, and others. 2005. Marine genomics: A clearinghouse for genomic and transcriptomic data of marine organisms. BMC Genomics 6(1):34.
13. Perez F, Ortiz J, Zhinaula M, Gonzabay C, Calderon J, Volckaert FA. 2005. Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy. Mar Biotechnol 7(5):554-69.
14. Rojtinnakorn J, Hirono I, Itami T, Takahashi Y, Aoki T. 2002. Gene expression in haemocytes of kuruma prawn, Penaeus japonicus, in response to infection with WSSV by EST approach. Fish Shellfish Immunol 13(1):69-83.
15. Stevens R, Goble CA, Bechhofer S. 2000. Ontology-based knowledge representation for bioinformatics. Brief Bioinform 1(4):398-414.
16. Supungul P, Klinbunga S, Pichyangkura R, Jitrapakdee S, Hirono I, Aoki T, Tassanakajon A. 2002. Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon). Mar Biotechnol 4(5):487-94.
17. Supungul P, Klinbunga S, Pichyangkura R, Hirono I, Aoki T, Tassanakajon A. 2004. Antimicrobial peptides discovered in the black tiger shrimp Penaeus monodon using the EST approach. Dis Aquat Organ 61(1-2):123-35.
18. van de Braak CB, Botterblom MH, Huisman EA, Rombout JH, van der Knaap WP. 2002. Preliminary study on haemocyte response to white spot syndrome virus infection in black tiger shrimp Penaeus monodon. Dis Aquat Organ 51(2):149-55.
19. Watanabe H, Tatarazako N, Oda S, Nishide H, Uchiyama I, Morita M, Iguchi T. 2005. Analysis of expressed sequence tags of the water flea Daphnia magna. Genome 48(4):606-9.
20. Yamano K, Unuma T. 2006. Expressed sequence tags from eyestalk of kuruma prawn, Marsupenaeus japonicus. Comp Biochem Physiol A Mol Integr Physiol 143(2):155-61.