Constructing a semantically enriched biomedical service space: A paradigm with bioinformatics resources

Studies in Health Technology and Informatics

Volumn 120, Issue , 2006, Pages 236-246

  Koutkias, Vassilis ^a   Malousi, Andigoni ^a   Chouvarda, Ioanna ^a   Maglaveras, Nicos ^a  

^a ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

bioinformatics resources; Grid services; ontologies; open environment; semantic integration; Service oriented model; software agents

Indexed keywords

BIOINFORMATICS; GRID COMPUTING; MEDICAL APPLICATIONS; ONTOLOGY; SEMANTICS; SOFTWARE AGENTS;

BIOINFORMATICS RESOURCES; GRID SERVICES; OPEN ENVIRONMENT; SEMANTIC INTEGRATION; SERVICE ORIENTED MODELING;

INTEROPERABILITY;

ARTICLE; BIOLOGY; COMPUTER PROGRAM; DATA BASE; GREECE; ORGANIZATION AND MANAGEMENT; SEMANTICS;

COMPUTATIONAL BIOLOGY; DATABASES; GREECE; SEMANTICS; SOFTWARE;

EID: 33750938657     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: None     Document Type: Conference Paper

References (21)

1. D. de Roure, N.R. Jennings, N.R. Shadbolt, The Semantic Grid: A future e-science infrastructure, Grid Computing-Making the Global Infrastructure a Reality, Wiley & Sons (2003), 437-470
2. C.A. Goble, D. de Roure, N.R. Shandbolt, A.A.A. Fernades, Enhancing services and applications with knowledge and semantics, The Grid: Blueprint for a new computing infrastructure (2nd edition), ser. Grid Computing, Elsevier (2004), 431-458
3. I. Foster, C. Kesselman, S. Tuecke, The anatomy of the Grid: Enabling scalable Virtual Organizations, International Journal of High Performance Computing Applications 15(3) (2001), 200-222
4. H. Wang, J.Z. Huang, Y. Qu, J. Xie, Web services: Problems and future directions, Journal of Web Semantics 1 (2004), 309-320
5. R. de Kniffer et al., A Web services choreography scenario for interoperating bioinformatics applications, BMC Bioinformatics 5(25) (2004
6. M.O. Shafiq, H.F. Ahmad, H. Suguri, A. Ali, Autonomous Semantic Grid: Principles of Autonomous Decentralized Systems for Grid Computing, IEICE Transactions on Information and Systems, E88- D(12) (2005), 2640-2650
7. M.P. Singh, M.N. Huhns, Service-oriented computing: Semantics, processes, agents, Wiley & Sons, 2005
8. H.T. Gao, J.H. Hayes, H. Cai, Integrating biological research through Web services, IEEE Computer 38(3) (2005), 26-31
9. M.D. Wilkinson, M. Links, BioMOBY: An open-source biological Web Services proposal, Briefings in Bioinformatics 3(4) (2002), 331-341
10. V. Breton et al., The Healthgrid White Paper, Proc. of HealthGrid 2005, Studies in Health Technology and Informatics, IOS Press 112 (2005), 249-318
11. I. Foster, C. Kesselman, Concepts and architecture, The Grid: Blueprint for a new computing infrastructure (2nd edition) ser. Grid Computing, Elsevier (2004), 37-63
12. L. Stein, Creating a bioinformatics nation, Nature 417 (2002), 19-20
13. I. Foster, N.R. Jennings, C. Kesselman, Brain meets brawn: Why Grid and agents need each other, Proc. of the 3rd Int. Joint Conference on Autonomous Agents and Multi-Agent Systems, New York, USA (2004), 8-15
14. L. Moreau et al., On the use of agents in a bioinformatics grid, Proc. of the 3rd CCGRID (2003), Tokyo, Japan
15. C. Mathé, M.F. Sagot, T. Schiex, P. Rouzé, Current methods of gene prediction, their strengths, and weaknesses, Nucleic Acids Research 30 (2002), 4103-4117
16. S. Rogic, A.K. Mackworth, F. Ouellette, Evaluation of gene-finding programs on mammalian sequences, Genomic Research 11 (2001), 817-832
17. N.F. Noy et al., Creating Semantic Web contents with Protege-2000, IEEE Intelligent Systems, 16(2) (2001), 60-71
18. V. Koutkias, A. Malousi, N. Maglaveras, Engineering agent-mediated integration of bioinformatics analysis tools, Proc. of 1st Int. Workshop on Multi-Agent Systems for Medicine, Computational Biology, and Bioinformatics, 4th Int. Joint Conference on Autonomous Agents and Multi-Agent Systems, Utrecht, The Netherlands (2005), 122-136
19. V. Koutkias, A. Malousi, N. Maglaveras, Performing ontology-driven gene prediction queries in a multi-agent environment, Proc. of ISBMDA, Lecture Notes in Computer Science, Springer-Verlag 3337 (2004), 378-387
20. F. Bellifemine, F. Bergenti, G. Caire, A. Poggi, JADE-A Java Agent Development Framework, Multi-Agent Programming: Languages, Platforms and Applications, ser. Multiagent Systems, Artificial Societies, and Simulated Organizations, Springer (2005), 125-147
21. L.Z. Varga, A. Hajnal, Engineering Web Service invocation from agent systems, Proc. of CEEMAS, Lecture Notes in Artificial Intelligence, Springer-Verlag 2691 (2003), 626-635