Expression and characterization of RNA-dependent RNA polymerase of Dendrolimus punctatus tetravirus

Journal of Biochemistry and Molecular Biology

Volumn 39, Issue 5, 2006, Pages 571-577

  Zhou, Liang ^a   Zhang, Jiamin ^a   Wang, Xiaochun ^a   Jiang, Hong ^a   Yi, Fuming ^a   Hu, Yuanyang ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

Dendrolimus punctatus tetravirus; RNA synthesis; RNA dependent RNA polymerase

Indexed keywords

DENDROLIMUS PUNCTATUS TETRAVIRUS; ESCHERICHIA COLI; NUDAURELIA CAPENSIS; OMEGATETRAVIRUS; TETRAVIRIDAE;

EID: 33750834501     PISSN: 12258687     EISSN: 12258687     Source Type: Journal    
DOI: 10.5483/bmbrep.2006.39.5.571     Document Type: Article

References (38)

1. Agrawal, D. K. and Johnson, J. E. (1992) Sequence and analysis of the capsid protein of Nudaurelia capensis virus, an insect virus with T = 4 icosahedral symmetry. Virology 190, 806-814.
2. Candresse, T., Morch, M. D. and Dunez, J. (1990) Multiple alignment and hierarchical clustering of conserved amino acid sequences in the replication-associated proteins of plant RNA viruses. Res. Virol. 141, 315-329.
3. Cong, P. J. and Shuman, S. (1995) Mutational analysis of mRNA capping enzyme identifies amino acids involved in GTP binding, enzyme-guanylate formation, and GMP transfer to RNA. Mol. Cell. Biol. 15, 6222-6231.
4. Fauquet, C. M., Mayo, M. A., Maniloff, J., Desselberger, U. and Ball, L. A. (2004) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. pp. 1258, Elsevier/Academic Press, London, UK.
5. Goldbach, R. W., Le Gall, O. and Wellink, J. (1991) Alpha-like viruses in plants. Semin. Virol. 2, 19-25.
6. Gorbalenya, A. E., Pringle, F. M., Zeddam, J. L., Luke, B. T., Cameron, C. E., Kalmakoff, J. K, Hanzlik, T. N., Gordon, K. H. and Ward, V. K. (2002) The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage. J. Mol. Biol. 324, 47-62.
7. Gros, C. and Wengler, G. (1996) Identification of an RNA-stimulated NTPase in the predicted helicase sequence of the Rubella virus nonstructural polyprotein. Virology 217, 367-372.
8. Gross, C. H. and Shuman, S. (1995) Mutational analysis of vaccinia virus nucleoside triphosphate phosphohydrolase II, a DExH box RNA helicase. J. Virol. 69, 4727-4736.
9. Gordon, K. H. J., Johnson, K. N. and Hanzlik, T. N. (1995) The larger genomic RNA of Helicoverpa armigera stunt tetravirus encodes the viral RNA polymerase and has a novel 3-terminal tRNA-like structure. Virology 208, 84-98.
10. Gordon, K. H. J., Williams, M. R., Hendry, D. A. and Hanzlik, T. N. (1999) Sequence of the genomic RNA of Nudaurelia virus (Tetraviridae) defines a novel virus genome organization. Virology 258, 42-53.
11. Hanzlik, T. N. and Gordon, K. H. J. (1997) The Tetraviridae. Adv. Virus. Res. 48, 101-168.
12. Hanzlik, T. N., Dorrian, S. J., Gordon, K. H. J. and Christian, P. D. (1993) A novel small RNA virus isolated from the cotton bollworm, Helicoverpa armigera. J. Gen. Virol. 74, 1805-1810.
13. Hanzlik, T. N., Dorrian, S. J., Johnson, K. N., Brooks, E. M. and Gordon, K. H. J. (1995) Sequence of RNA2 of the Helicoverpa armigera stunt tetravirus (Tetraviridae) and bacterial expression of its genes. J. Gen. Virol. 76, 799-811.
14. Hendry, D. A., Johnson, J. E., Rueckert, R. R., Scotti, P. D. and Hanzlik, T. N. (1995) Family Tetraviridae. In virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses, Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W., Martelli, G. P., Mayo, M. A. and Summers, M. D., (eds.), pp. 372-375, Springer, New york, USA.
15. Hobson, S. D., Rosenblum, E. S., Richards, O. C., Richmond, K., Kirkegaard, K. and Schultz, S. C. (2001) Oligomeric structures of poliovirus polymerase are important for function. EMBO. J. 20, 1153-1163.
16. Inokuchi, K. and Hirashima, A. (1988) Interference with viral infection by defective RNA replicase. J. Virol. 61, 3946-3949.
17. Jablonski, S. A. and Morrow, C. D. (1993) Enzymatic activity of poliovirus RNA polymerases with mutations at the tyrosine residue of the conserved YGDD motif: isolation and characterization of polioviruses containing RNA polymerases with FGDD and MGDD sequences. J. Virol. 67, 373-381.
18. Kao, C. C. and Ahlquist, P. (1992) Identification of the domains required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus. J. Virol. 66, 7293-7302.
19. Kashiwagi, T., Hara, K., Kohara, M., Kohara, K., Iwahashi, J., Hamada, N., Yoshino, H. and Toyoda, T. (2002) Kinetic analysis of C-terminally truncated RNA-dependent RNA polymerase of hepatitis C virus. Biochem. Biophys. Res. Commun. 290, 1188-1194.
20. Kohlstaedt, L. A., Wang, J. and Friedman, J. M. (1992) Crystal structure at 3.5 A resolution of HIV-1 revers transcriptase complexes with an inhibitor. Science 256, 1783-1790.
21. Koonin, E. V. and Dolja, V. V. (1993) Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28, 375-430.
22. Koonin, E. V., Gorbalenya, A. E., Purdy, M. A., Rozanov, M. N., Reyes, G. R. and Bradley, D. W. (1992) Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-strand RNA plant and animal viruses. Proc. Natl. Acad. Sci. USA 89, 8259-8263.
23. Mi, S., Durbin, R., Huang, H. V., Rice, C. M. and Stollar, V. (1989) Association of the Sindbis virus RNA methyltransferase activity with the nonstructural protein nsP1. Virology 170, 385-391.
24. Moore, N. F. and Tinsley, T. W. (1982) The small rna-viruses of insects. Arch. Virol. 72, 229-245.
25. Morch, M. D., Drugeon, G., Szafranski, P. and Haenni, A. L. (1989) Proteolytic origin of the 150-kilodalton protein encoded by turnip yellow mosaic virus genomic RNA. J. Virol. 63, 5153-5158.
26. Plotch, S. J., Palant, O. and Gluzman, Y. (1989) Purification and properties of poliovirus RNA polymerase expressed in Escherichia coli. J. Virol. 63, 216-225.
27. Poch, O., Sauvaget, I., Delarue, M. and Tordo, N. (1989) Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO. J. 8, 3867-3874.
28. Pringle, F. M., Gordon, K. H. J., Hanzlik, T. N., Kalmakoff, J., Scotti, P. D. and Ward, V. K. (1999) A novel capsid expression strategy for Thosea asigna virus (Tetraviridae). J. Gen. Virol. 80, 1855-1863.
29. Pringle, F. M., Johnson, K. N., Goodman, C. L., Mclntosh, A. H. and Ball, L. A. (2003) Providence virus: a new member of the Tetraviridae that infects cultured insect cells. Virology 306, 359-370.
30. Ranjith-Kumar, C. T., Gajewski, J., Gutshall, L., Maley, D., Sarisky, R. T. and Kao, C. C. (2001) Terminal nucleotidyl transferase activity of recombinant Flaviviridae RNA-dependent RNA polymerases: implication for viral RNA synthesis. J. Virol. 75, 8615-8623.
31. Reyes, G. R., Purdy, M. A., Kim, J. P., Luk, K. C., Young, L., Fry, K. E. and Bradley, D. W. (1990) Isolation of a cDNA from the virus responsible for enterically transmitted non-A, non-B hepatitis. Science 247, 1335-1339.
32. Scotti, P. D. (1985) The estimation of virus density in isopycnic cesium chloride gradients. J. Virol. Methods 12, 149-160.
33. Strauss, J. H. and Strauss, E. G. (1994) The alphaviruses: gene expression, replication, and evolution. Microbiol. Rev. 58, 491-562.
34. Triana-Alonso, F. J., Dabrowski, M., Wadzack, J. and Nierhaus, K. H. (1995) Self-coded 3-extension of runoff transcripts produces aberrant products during in vitro transcription with T7 RNA polymerase. J. Biol. Chem. 270, 6298-6307.
35. Walker, D. E., McPherson, D., Jablonski, S. A., McPherson, S. and Morrow, C. D. (1995) An aspartic acid at amino acid 108 is required to rescue infectious virus after transfection of a poliovirus cDNA containing a CGDD but not SGDD amino acid motif in 3Dpol. J. Virol. 69, 8173-8177.
36. Wang, C., Sarnow, P. and Siddiqui, A. (1994) A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA. J. Virol. 68, 7301-7307.
37. Yi, F. M., Zhang, J. M., Yu, H. Y., Liu, C. F., Wang, J. P. and Hu, Y. Y. (2005) Isolation and identification of a new tetravirus from Dendrolimus Punctatus larvae collected from Yunnan Province, China. J. Gen. Virol. 86, 789-796.
38. Yi, G. H., Zhang, C. Y., Cao, S., Wu, H. X. and Wang, Y. (2003) De novo RNA synthesis by a recombinant classical swine fever virus RNA-dependent RNA polymerase. Eur. J. Biochem. 270, 4952-4961.