The sodA gene as a target for phylogenetic dissection of the genus Haemophilus and accurate identification of human clinical isolates

International Journal of Medical Microbiology

Volumn 296, Issue 8, 2006, Pages 531-540

  Cattoir, Vincent ^a   Lemenand, Olivier ^a   Avril, Jean Loup ^a   Gaillot, Olivier ^a  

^a UNIVERSITÉ DE RENNES 1   (France)

Author keywords

Haemophilus; Molecular phylogeny; Pasteurellaceae; Sequence based identification; Superoxide dismutase

Indexed keywords

RNA 16S;

ACTINOBACILLUS ACTINOMYCETEMCOMITANS; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; GENE CLUSTER; GENE SEQUENCE; GENETIC VARIABILITY; HAEMOPHILUS; HAEMOPHILUS APHROPHILUS; HOUSEKEEPING GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PASTEURELLACEAE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA ANALYSIS; SEQUENCE ANALYSIS; SODA GENE;

EID: 33750629651     PISSN: 14384221     EISSN: 16180607     Source Type: Journal    
DOI: 10.1016/j.ijmm.2006.06.005     Document Type: Article

References (32)

1. Blackall P.J., Christensen H., Beckenham T., Blackall L.L., and Bisgaard M. Reclassification of Pasteurella gallinarum, [Haemophilus] paragallinarum, Pasteurella avium and Pasteurella volantium as Avibacterium gallinarum gen. nov., comb. nov., Avibacterium paragallinarum comb. nov., Avibacterium avium comb. nov. and Avibacterium volantium comb. nov. Int. J. Syst. Evol. Microbiol. 55 (2005) 353-362
2. Bowers L.C., Purcell J.E., Plauche G.B., Denoel P.A., Lobet Y., and Philipp M.T. Assessment of the nasopharyngeal bacterial flora of rhesus macaques: Moraxella, Neisseria, Haemophilus, and other genera. J. Clin. Microbiol. 40 (2002) 4340-4342
3. Brouqui P., and Raoult D. Endocarditis due to rare and fastidious bacteria. Clin. Microbiol. Rev. 14 (2001) 177-207
4. Casin I., Grimont F., and Grimont P.A. Deoxyribonucleic acid relatedness between Haemophilus aegyptius and Haemophilus influenzae. Ann. Inst. Pasteur Microbiol. 137B (1986) 155-163
5. Christensen H., Kuhnert P., Olsen J.E., and Bisgaard M. Comparative phylogenies of the housekeeping genes atpD, infB and rpoB and the 16S rRNA gene within the Pasteurellaceae. Int. J. Syst. Evol. Microbiol. 54 (2004) 1601-1609
6. Dewhirst F.E., Paster B.J., Olsen I., and Fraser G.J. Phylogeny of 54 representative strains of species in the family Pasteurellaceae as determined by comparison of 16S rRNA sequences. J. Bacteriol. 174 (1992) 2002-2013
7. Foxwell A.R., Kyd J.M., and Cripps A.W. Nontypeable Haemophilus influenzae: pathogenesis and prevention. Microbiol. Mol. Biol. Rev. 62 (1998) 294-308
8. Frederiksen W., and Tonning B. Possible misidentification of Haemophilus aphrophilus as Pasteurella gallinarum. Clin. Infect. Dis. 32 (2001) 987-989
9. Gautier A.L., Dubois D., Escande F., Avril J.L., Trieu-Cuot P., and Gaillot O. Rapid and accurate identification of human isolates of Pasteurella and related species by sequencing the sodA gene. J. Clin. Microbiol. 43 (2005) 2307-2314
10. Giammarinaro P., Leroy S., Chacornac J.P., Delmas J., and Talon R. Development of a new oligonucleotide array to identify staphylococcal strains at species level. J. Clin. Microbiol. 43 (2005) 3673-3680
11. Gromkova R.C., Mottalini T.C., and Dove M.G. Genetic transformation in Haemophilus parainfluenzae clinical isolates. Curr. Microbiol. 37 (1998) 123-126
12. Hedegaard J., Okkels H., Bruun B., Kilian M., Mortensen K.K., and Nørskov-Lauritsen N. Phylogeny of the genus Haemophilus as determined by comparison of partial infB sequences. Microbiology 147 (2001) 2599-2609
13. Henderson B., Nair S.P., Ward J.M., and Wilson M. Molecular pathogenicity of the oral opportunistic pathogen Actinobacillus actinomycetemcomitans. Annu. Rev. Microbiol. 57 (2003) 29-55
14. ICSB, Subcommittee on. Minutes of the meetings, 6 and 10 September 1986, Manchester, England. Int. J. Syst. Bacteriol. 37 (1987) 474
15. Kilian M. Haemophilus. In: Murray P.R. (Ed). Manual of Clinical Microbiology, eighth ed (2003), ASM Press, Washington, DC 623-635
16. Kilian, M., 2005. Genus Haemophilus. In: Garrity, G.M. (Ed.), Bergey's Manual of Systematic Bacteriology, vol. 2, second ed. Springer, New York.
17. Korczak B., Christensen H., Emler S., Frey J., and Kuhnert P. Phylogeny of the family Pasteurellaceae based on rpoB sequences. Int. J. Syst. Evol. Microbiol. 54 (2004) 1393-1399
18. Kroll J.S., Langford P.R., Saah J.R., and Loynds B.M. Molecular and genetic characterization of superoxide dismutase in Haemophilus influenzae type b. Mol. Microbiol. 10 (1993) 839-848
19. Lau S.K., Woo P.C., Mok M.Y., Teng J.L., Tam V.K., Chan K.K., and Yuen K.Y. Characterization of Haemophilus segnis, an important cause of bacteremia, by 16S rRNA gene sequencing. J. Clin. Microbiol. 42 (2004) 877-880
20. Murphy T.F. Haemophilus infections. In: Mandell G.L., Bennet J.E., and Dolin R. (Eds). Principles and Practice of Infectious Diseases, sixth ed (2005), Elsevier Churchill Livingstone, Philadelphia 2661-2669
21. Mutters R., Mannheim W., and Bisgaard M. Taxonomy of the group. In: Adlam C., and Rutter J.M. (Eds). Pasteurella and Pasteurellosis (1989), Academic Press, London 3-34
22. Nickel L., and Goodgal S.H. Effect of interspecific transformation on linkage relationships of markers in Haemophilus influenzae and Haemophilus parainfluenzae. J. Bacteriol. 88 (1964) 1538-1544
23. Nørskov-Lauritsen N., Bruun B., and Kilian M. Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov. Int. J. Syst. Evol. Microbiol. 55 (2005) 449-456
24. Parker M.W., and Blake C.C.F. Iron- and manganese-containing superoxide dismutases can be distinguished by analysis of their primary structures. FEBS Lett. 229 (1988) 377-382
25. Potts T.V., Zambon J.J., and Genco R.J. Reassignment of Actinobacillus actinomycetemcomitans to the genus Haemophilus as Haemophilus actinomycetemcomitans comb. nov. Int. J. Syst. Bacteriol. 35 (1985) 337-341
26. Poyart C., Quesne G., Coulon S., Berche P., and Trieu-Cuot P. Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J. Clin. Microbiol. 36 (1998) 41-47
27. Poyart C., Quesne G., and Trieu-Cuot P. Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci. J. Clin. Microbiol. 38 (2000) 415-418
28. Poyart C., Quesne G., Boumaila C., and Trieu-Cuot P. Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target. J. Clin. Microbiol. 39 (2001) 4296-4301
29. Riggio M.P., and Lennon A. Rapid identification of Actinobacillus actinomycetemcomitans, Haemophilus aphrophilus, and Haemophilus paraphrophilus by restriction enzyme analysis of PCR-amplified 16S rRNA genes. J. Clin. Microbiol. 35 (1997) 1630-1632
30. Sacchi C.T., Alber D., Dull P., Mothershed E.A., Whitney A.M., Barnett G.A., Popovic T., and Mayer L.W. High level of sequence diversity in the 16S rRNA genes of Haemophilus influenzae isolates is useful for molecular subtyping. J. Clin. Microbiol. 43 (2005) 3734-3742
31. San Mateo L.R., Toffer K.L., and Kawula T.H. The sodA gene of Haemophilus ducreyi encodes a hydrogen peroxide-inhibitable superoxide dismutase. Gene 207 (1998) 251-257
32. Trees D.L., and Morse S.A. Chancroid and Haemophilus ducreyi: an update. Clin. Microbiol. Rev. 8 (1995) 357-375