Comparative integromics on BMP/GDF family

International Journal of Molecular Medicine

Volumn 17, Issue 5, 2006, Pages 951-955

  Katoh, Yuriko ^a   Katoh, Masaru ^b  

^a M&M Medical BioInformatics   (Japan)

^b NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

Author keywords

Bioinformatics; BMP; Comparative genomics; Comparative proteomics; GDF; Integrome network; Systems medicine; WNT

Indexed keywords

BONE MORPHOGENETIC PROTEIN; MESSENGER RNA; OSTEOGENIN; T CELL FACTOR PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BINDING SITE; BIOLOGY; COMPARATIVE STUDY; DNA BASE COMPOSITION; GENE EXPRESSION PROFILING; GENETICS; GENOMICS; HUMAN; MALE; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; MOUSE; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PAN TROGLODYTES; PHYLOGENY; PROMOTER REGION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE COMPOSITION; BASE SEQUENCE; BINDING SITES; BONE MORPHOGENETIC PROTEINS; COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENOMICS; HUMANS; MALE; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PAN TROGLODYTES; PHYLOGENY; PROMOTER REGIONS (GENETICS); RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TCF TRANSCRIPTION FACTORS;

EID: 33750577229     PISSN: 11073756     EISSN: 1791244X     Source Type: Journal    
DOI: 10.3892/ijmm.17.5.951     Document Type: Article

References (38)

1. Katoh M: WNT and FGF gene clusters (Review). Int J Oncol 21: 1269-1273, 2002.
2. Radtke F and Raj K: The role of Notch in tumorigenesis: oncogene or tumor suppressor? Nat Rev Cancer 3: 765-767, 2003.
3. Garciadiego-Cazares D, Rosales C, Katoh M and Chimal- Monroy J: Coordination of chondrocyte differentiation and joint formation by α5β1 integrin in the developing appendicular skeleton. Development 131: 4735-4742, 2004.
4. Hooper JF and Scott MP: Communicating with Hedgehogs. Nat Rev Mol Cell Biol 6: 306-317, 2005.
5. Katoh Y and Katoh M: Hedgehog signaling in gastric cancer. Cancer Biol Ther 4: 1050-1054, 2005.
6. Katoh Y and Katoh M: WNT antagonist, SFRP1, is Hedgehog signaling target. Int J Mol Med 17: 171-175, 2006.
7. Varga AC and Wrana JL: The disparate role of BMP in stem cell biology. Oncogene 24: 5713-5721, 2005.
8. Katoh Y and Katoh M: Comparative genomics on BMP4 orthologs. Int J Oncol 27: 581-585, 2005.
9. Katoh M: Regulation of WNT signaling molecules by retinoic acid during neuronal differentiation in NT2 cells: threshold model of WNT action (Review). Int J Mol Med 10: 683-687, 2002.
10. Katoh M and Katoh M: Identification and characterization of human BCL9L gene and mouse Bcl9l gene in silico. Int J Mol Med 12: 643-649, 2003.
11. Heller RS, Klein T, Ling Z, Heimberg H, Katoh M, Madsen OD and Serup P: Expression of WNT, Frizzled, sFRP, and DKK genes in adult human pancreas. Gene Expr 11: 141-147, 2003.
12. Katoh M: WNT2B: comparative integromics and clinical application (Review). Int J Mol Med 16: 1103-1108, 2005.
13. Katoh M: Epithelial-mesenchymal transition in gastric cancer (Review). Int J Oncol 27: 1677-1683, 2005.
14. Swain RK, Katoh M, Medina A and Steinbeisser H: Xenopus frizzled-4S, a splicing variant of Xfz4, is a context-dependent activator and inhibitor of Wnt/β-catenin signaling. Cell Commun Signal 3: 12, 2005.
15. Katoh Y and Katoh M: Comparative genomics on FGF16 orthologs. Int J Mol Med 16: 959-963, 2005.
16. Katoh M and Katoh M: Comparative genomics on FGF8, FGF17, and FGF18 orthologs. Int J Mol Med 16: 493-496, 2005.
17. Katoh M and Katoh M: Comparative genomics on FGF20 orthologs. Oncol Rep 14: 287-290, 2005.
18. Katoh Y and Katoh M: Comparative genomics on DKK1 orthologs. Int J Oncol 27: 275-279, 2005.
19. Katoh Y and Katoh M: Comparative genomics on DKK2 and DKK4 orthologs. Int J Mol Med 16: 477-481, 2005.
20. Heldin CH, Miyazono K and ten Dijke P: TGFβ signaling from cell membrane to nucleus through SMAD proteins. Nature 390: 465-471, 1997.
21. Massague J: TGFβ signal transduction. Annu Rev Biochem 67: 753-791, 1998.
22. Miyazono K, ten Dijke P and Heldin CH: Divergence and convergence of TGFβ/BMP signaling. J Cell Physiol 187: 265-276, 2001.
23. Whiteman M: Nodal signaling in early vertebrate embryos: themes and variations. Dev Cell 1: 605-617, 2001.
24. Zhang J and Li L: BMP signaling and stem cell regulation. Dev Biol 284: 1-11, 2005.
25. Katoh M: Paradigm shift in gene-finding method: from benchtop approach to desk-top approach. Int J Mol Med 10: 677-682, 2002.
26. Katoh M and Katoh M: Identification and characterization of human HES2, HES3, and HES5 genes in silico. Int J Oncol 25: 529-534, 2004.
27. Katoh M and Katoh M: Identification and characterization of human HESL, rat Hesl and rainbow trout hesl genes in silico. Int J Mol Med 14: 747-751, 2005.
28. Katoh Y and Katoh M: Identification and characterization of rat Wnt6 and Wnt10a genes in silico. Int J Mol Med 15: 527-531, 2005.
29. Katoh Y and Katoh M: Comparative genomics on SLIT1, SLIT2, and SLIT3 orthologs. Oncol Rep 14: 1351-1355, 2005.
30. Katoh Y and Katoh M: Comparative genomics on HHIP family orthologs. Int J Mol Med 17: 391-395, 2006.
31. Katoh Y and Katoh M: Identification and characterization of rat Wnt1 and Wnt10b genes in silico. Int J Oncol 26: 841-845, 2005.
32. Katoh M and Katoh M: Comparative genomics on WNT8A and WNT8B genes. Int J Oncol 26: 1129-1133, 2005.
33. Katoh M: Molecular evolution of WNT2B orthologs. Int J Oncol 26: 1135-1139, 2005.
34. Katoh M: Comparative genomics on WNT3-WNT9B gene cluster. Int J Mol Med 15: 743-747, 2005.
35. Katoh M and Katoh M: Comparative genomics on WNT5A and WNT5B genes. Int J Mol Med 15: 749-753, 2005.
36. Katoh Y and Katoh M: Comparative genomics on WNT11 gene. Int J Mol Med 15: 879-883, 2005.
37. Katoh Y and Katoh M: Comparative genomics on VANGL1 and VANGL2 genes. Int J Oncol 26: 1435-1440, 2005.
38. Katoh Y and Katoh M: Comparative genomics on SFRP1 orthologs. Int J Oncol 27: 861-865, 2005.