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Volumn , Issue , 2003, Pages 169-179

CTSS: A robust and efficient method for protein structure alignment based on local geometrical and biological features

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT; COMPUTATION THEORY; EFFICIENCY; GEOMETRY; PROTEINS; STRUCTURE (COMPOSITION);

EID: 33750563354     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CSB.2003.1227316     Document Type: Conference Paper
Times cited : (48)

References (27)
  • 5
  • 10
    • 0029982530 scopus 로고    scopus 로고
    • The structural alignment between two proteins: Is there a unique answer?
    • Godzik, A., "The structural alignment between two proteins: Is there a unique answer?", Protein Science, 5(7): 1325-1338, 1996.
    • (1996) Protein Science , vol.5 , Issue.7 , pp. 1325-1338
    • Godzik, A.1
  • 12
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S. and Henikoff, J.G., "Amino acid substitution matrices from protein blocks", Proc. Natl. Acad. Sci. U.S.A, 89: 10915-10919, 1992.
    • (1992) Proc. Natl. Acad. Sci. U.S.A , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 13
    • 0027440362 scopus 로고
    • Protein Structure Comparison by Alignment of Distance Matrices
    • Holm, L. and Sander, C., "Protein Structure Comparison by Alignment of Distance Matrices", Journal of Molecular Biology, 233(1): 123-138, 1993.
    • (1993) Journal of Molecular Biology , vol.233 , Issue.1 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 15
    • 0027092678 scopus 로고
    • Selection of a representative protein data sets
    • Hobohm, U., Scharf, M., Schneider, R., and Sander, C., "Selection of a representative protein data sets", Protein Science, 1(3): 409-417, 1992.
    • (1992) Protein Science , vol.1 , Issue.3 , pp. 409-417
    • Hobohm, U.1    Scharf, M.2    Schneider, R.3    Sander, C.4
  • 16
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C., "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features", Biopolymers, 22(12): 2577-637, 1983.
    • (1983) Biopolymers , vol.22 , Issue.12 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 20
    • 0034479757 scopus 로고    scopus 로고
    • TOP: A new method for protein structure comparison and similarity searches
    • Lu, G., "TOP: a new method for protein structure comparison and similarity searches", Journal of Applied Crystallography, 33(1): 176-183, 2000.
    • (2000) Journal of Applied Crystallography , vol.33 , Issue.1 , pp. 176-183
    • Lu, G.1
  • 21
    • 0025719208 scopus 로고
    • Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques
    • Nussinov, R. and Wolfson, H.J., "Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques", Biophysics, 88: 10495-10499, 1991.
    • (1991) Biophysics , vol.88 , pp. 10495-10499
    • Nussinov, R.1    Wolfson, H.J.2
  • 22
    • 0031697713 scopus 로고    scopus 로고
    • A geometric algorithm to find small but highly similar 3D substructures in proteins
    • Pennec, X. and Ayache, N., "A geometric algorithm to find small but highly similar 3D substructures in proteins", Bioinformatics, 14(6): 516-522, 1998.
    • (1998) Bioinformatics , vol.14 , Issue.6 , pp. 516-522
    • Pennec, X.1    Ayache, N.2
  • 23
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov, I.N., Bourne, P.E., "Protein structure alignment by incremental combinatorial extension (CE) of the optimal path", Protein Engineering, 11(9): 739-747, 1998.
    • (1998) Protein Engineering , vol.11 , Issue.9 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 25
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, R. and Waterman, M.S., "Identification of common molecular subsequences", Journal of Molecular Biology, 147(1): 195-197, 1981.
    • (1981) Journal of Molecular Biology , vol.147 , Issue.1 , pp. 195-197
    • Smith, R.1    Waterman, M.S.2
  • 26
    • 0026137964 scopus 로고
    • Least-squares estimation of transformation parameters between two point patterns
    • Umeyama, S., "Least-squares estimation of transformation parameters between two point patterns", IEEE Trans. Pattern Analysis and Machine Vision, 13(4): 376-380, 1991.
    • (1991) IEEE Trans. Pattern Analysis and Machine Vision , vol.13 , Issue.4 , pp. 376-380
    • Umeyama, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.