Structural characterization of NDH-1 complexes of Thermosynechococcus elongatus by single particle electron microscopy

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1757, Issue 11, 2006, Pages 1469-1475

  Arteni, Ana A ^a   Zhang, Pengpeng ^b   Battchikova, Natalia ^b   Ogawa, Teruo ^b   Aro, Eva Mari ^b   Boekema, Egbert J ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b UNIVERSITY OF TURKU   (Finland)

Author keywords

Complex I; Electron microscopy; NDH 1; Thermosynechococcus elongatus

Indexed keywords

BACTERIAL PROTEIN; CARBON DIOXIDE; OXIDOREDUCTASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE); REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE DEHYDROGENASE 1; UNCLASSIFIED DRUG;

ARTICLE; CYANOBACTERIUM; ELECTRON MICROSCOPY; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME STRUCTURE; ENZYME SUBUNIT; ESCHERICHIA COLI; HYDROPHILICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; THERMOSYNECHOCOCCUS ELONGATUS; WILD TYPE;

BACTERIAL PROTEINS; BIOCHEMISTRY; CARBON DIOXIDE; CHROMATOGRAPHY, AFFINITY; CYANOBACTERIA; DETERGENTS; ESCHERICHIA COLI; GENETIC TECHNIQUES; MICROSCOPY, ELECTRON; NAD(P)H DEHYDROGENASE (QUINONE); NADH DEHYDROGENASE; NICKEL; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; THYLAKOIDS;

CYANOBACTERIA; THERMOSYNECHOCOCCUS ELONGATUS; THERMOSYNECHOCOCCUS ELONGATUS BP-1;

EID: 33750514379     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2006.05.042     Document Type: Article

References (34)

1. Kotani H., and Tabata S. Lessons from sequencing of the genome of a unicellular cyanobacterium, Synechocystis Sp. PC6803. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49 (1998) 151-171
2. Friedrich T., Steinmüller K., and Weiss H. The proton pumping respiratory complex I of bacteria and mitochondria and its homologue in chloroplasts. FEBS Lett. 367 (1995) 107-111
3. 2 uptake systems in cyanobacteria: genes involved and their phylogenetic relationship with homologous genes in other organisms. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 11789-11794
4. Shibata M., Katoh H., Sonoda M., Ohkawa H., Shimoyama M., Fukuzawa H., Kaplan A., and Ogawa T. Genes essential to sodium-dependent bicarbonate transport in Cyanobacteria: function and phylogenetic analysis. J. Biol. Chem. 277 (2002) 18658-18664
5. Tamagnini P., Axelsson R., Lindberg P., Oxelfelt F., Wünschiers R., and Lindblad P. Hydrogenases and hydrogen metabolism of cyanobacteria. Microbiol. Mol. Biol. Rev. 66 (2002) 1-20
6. 2 converting mechanism in several cyanobacterial strains: a review of general physiological characteristics, genes, proteins and recent advances. Can. J. Bot. 76 (1998) 973-1002
7. Mi H., Endo T., Schreiber U., Ogawa T., and Asada K. Electron donation from cyclic and respiratory flows to the photosynthetic intersystem chain is mediated by pyridine nucleotide dehydrogenase in the cyanobacterium Synechocystis PCC 6803. Plant Cell Physiol. 33 (1992) 1233-1237
8. Mi H., Endo T., Ogawa T., and Asada K. Thylakoid membrane-bound, NADPH-specific pyridine-nucleotide dehydrogenase complex mediates cyclic electron-transport in the cyanobacterium Synechocystis SP PCC-68038. Plant Cell Physiol. 36 (1995) 661-668
9. Ohkawa H., Pakrasi H.B., and Ogawa T. Two types of functionally distinct NAD(P)H dehydrogenases in Synechocystis sp. Strain PCC6803. J. Biol. Chem. 275 (2000) 31630-31634
10. 2-concentrating mechanism in cyanobacteria. Can. J. Bot. 76 (1998) 1035-1042
11. Klughammer B., Sultemeyer D., Badger M.R., and Price G.D. The involvement of NAD(P)H dehydrogenase subunits, NdhD3 and NdhF3, in high-affinity CO2 uptake in Synechococcus sp. PCC7002 gives evidence for multiple NDH-1 complexes with specific roles in cyanobacteria. Mol. Microbiol. 32 (1999) 1305-1315
12. 2 hydration in the cyanobacterium Synechococcus sp PCC7942. Mol. Microbiol. 43 (2002) 425-435
13. Volokita M., Zenvirth D., Kaplan A., and Reinhold L. Nature of the inorganic carbon species actively taken up by the cyanobacterium Anabena variabilis. Plant. Physiol. 76 (1984) 599-602
14. 2 concentrating mechanisms in photosynthetic microorganisms. Annu. Rev. Plant Physiol. Mol. Biol. 50 (1999) 539-570
15. Ogawa T., and Kaplan A. Inorganic carbon acquisition systems in cyanobacteria. Photosynth. Res. 77 (2003) 105-115
16. Hofhaus G., Weiss H., and Leonard K. Electron microscopic analysis of the peripheral and membrane parts of mitochondrial NADH dehydrogenase (Complex I). J. Mol. Biol. 221 (1991) 1027-1043
17. Guenebaut V., Vincentelli R., Mills D., Weiss H., and Leonard K.R. Three-dimensional structure of NADH-dehydrogenase from Neurospora crassa by electron microscopy and conical tilt reconstitution. J. Mol. Biol. 265 (1997) 409-418
18. Grigorieff N. Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (Complex I) at 22 Å in ice. J. Mol. Biol. 277 (1998) 1033-1046
19. Böttcher B., Scheide D., Hesterberg M., Nagel-Steger L., and Friedrich T. A novel, enzymatically active conformation of the Escherichia coli NADH: ubiquinone oxidoreductase (Complex I). J. Biol. Chem. 277 (2002) 17970-17977
20. Abdrakhmanova A., Zickermann V., Bostina M., Radermacher M., Schägger H., Kerscher S., and Brandt U. Subunit composition of mitochondrial complex I from the yeast Yarrowia lipolytica. J. Mol. Biol. 1658 (2004) 148-156
21. Zhang P., Battchikova N., Paakkarinen V., Katoh H., Iwai M., Ikeuchi M., Pakrasi H.B., Ogawa T., and Aro E.-M. Isolation, subunit composition and interaction of the NDH-1 complexes from Thermosynechococcus elongatus BP-1. Biochem. J. 390 (2005) 513-520
22. Herranen M., Battchikova N., Zhang P., Graf A., Sirpio S., Paakkarinen V., and Aro E.-M. Towards functional proteomics of membrane protein complexes in Synechocystis sp. PCC 6803. Plant Physiol. 134 (2004) 470-481
23. Zhang P., Battchikova N., Jansen T., Appel J., Ogawa T., and Aro E.-M. Expression and functional roles of the two distinct NDH-1 complexes and the carbon acquisition complex NdhD3/ NdhF3/CupA/Sll1735 in Synechocystis sp PCC 6803. Plant Cell 16 (2004) 3326-3340
24. Arteni A.A., Nowaczyk M., Lax J., Kouřil R., Rögner M., and Boekema E.J. Single particle electron microscopy in combination with mass spectrometry to investigate novel complexes of membrane proteins. J. Struct. Biol. 149 (2005) 325-331
25. Harauz G., Boekema E.J., and van Heel M. Statistical analysis of electron micrographs of ribosomal subunits. Methods Enzymol. 164 (1988) 35-49
26. Penczek P., Radermacher M., and Frank J. Three-dimensional reconstruction of single particles embedded in ice. Ultramicroscopy 40 (1992) 33-53
27. Djafarzadeh R., Kerscher S., Zwicker K., Radermacher M., Lindahl M., Schägger H., and Brandt U. Biophysical and structural characterization of proton-translocating NADH-dehydrogenase (complex I) from the strictly aerobic yeast Yarrowia lipolytica. Biochim. Biophys. Acta 1459 (2000) 230-238
28. Peng G., Fritzch G., Zickermann V., Schägger H., Mentele R., Lottspeich F., Bostina M., Radermacher M., Huber R., Stetter K.O., and Michel H. Isolation, characterization and electron microscopic single particle analysis of the NADH: ubiquinone (ComplexI) from the hyperthermophilic eubacterium Aquifex aeolicus. Biochemistry 42 (2003) 3032-3039
29. Rumeau P., Bécuwe-Linka N., Bewly A., Louwagie M., Garin J., and Peltier G. New subunits NDH-M,-N, and -O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants. Plant Cell 17 (2005) 219-232
30. Sunderhaus S., Dudkina N., Jänsch L., Klodmann J., Heinemeyer J., Perales M., Zabaleta E., Boekema E., and Braun H.P. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. J. Biol. Chem. 281 (2006) 6482-6488
31. Prommeenate P., Lennon A.M., Markert C., Hippler M., and Nixon P.J. Subunit composition of NDH-1 complexes of Synechocystis sp. PCC 6803: identification of two new ndh gene products with nuclear-encoded homologues in the chloroplast Ndh complex. J. Biol. Chem. 279 (2004) 28165-28173
32. Sazanov L.A., Burrows P.A., and Nixon P.J. The plastid ndh genes code for an NADH-specific dehydrogenase: isolation of a complex I analogue from pea thylakoid membranes. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 1319-1324
33. Büchel C., Morris E., Orlova E., and Barber J. Localisation of the PsbH subunit in photosystem II: a new approach using labelling of His-tags with a Ni(2+)-NTA gold cluster and single particle analysis. J. Mol. Biol. 312 (2001) 371-379
34. Dudkina N.V., Eubel H., Keegstra W., Boekema E.J., and Braun H.P. Structure of a mitochondrial supercomplex formed by respiratory-chain complexes I and III. Proc. Natl. Acad. Sci. 102 (2005) 3225-3229