Comparing evolutionary algorithms on the problem of network inference

GECCO 2006 - Genetic and Evolutionary Computation Conference

Volumn 1, Issue , 2006, Pages 305-306

  Spieth, Christian ^a   Worzischek, Rene ^a   Streichert, Felix ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

Evolutionary Computation; Inference; Systems Biology

Indexed keywords

DATA REDUCTION; DNA; GENES; MATHEMATICAL MODELS; MATRIX ALGEBRA; MUTAGENESIS; OPTIMIZATION;

CROSSOVER OPERATORS; GENE REGULATORY NETWORKS; INFERENCE PROBLEMS; SYSTEMS BIOLOGY;

EVOLUTIONARY ALGORITHMS;

EID: 33750264435     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1143997.1144052     Document Type: Conference Paper

References (9)

1. H. de Jong. Modeling and simulation of genetic regulatory systems: A literature review. Journal of Computational Biology, 9(1):67-103, January 2002.
2. K. Hadeler. Gedanken zur Parameteridentifikation. Personal Communication, 2003.
3. S. Kikuchi, D. Tominaga, M. Arita, K. Takahashi, and M. Tomita. Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinformatics, 19(5):643-650, 2003.
4. S. Kimura, K. Ide, A. Kashihara, M. Kano, M. Hatakeyama, R. Masui, N. Nakagawa, S. Yokoyama, S. Kuramitsu, and A. Konagaya. Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics, 21 (7): 1154-1163, 2005.
5. M. A. Savageau. 20 years of S-systems. In Canonical Nonlinear Modeling. S-systems Approach to Understand Complexity, pages 1-44, 1991.
6. C. Spieth. JCell: A Java framework for inferring genetic networks. Technical Report WSI-2005-07, Centre for Bioinformatics Tübingen, University of Tübingen, 2005.
7. C. Spieth, N. Hassis, F. Streichert, J. Supper, K. B. N. Speer and, and A. Zell. Comparing mathematical models on the problem of network inference. In Proceedings of the Genetic and Evolutionary Computation Conference, 2006.
8. D. Weaver, C. Workman, and G. Stormo. Modeling regulatory networks with weight matrices. In Proceedings of the Pacific Symposium on Biocomputing, volume 4, pages 112-123, 1999.
9. M. K. S. Yeung, J. Tegner, and J. J. Collins. Reverse engineering gene networks using singular value decomposition and robust regression. In Proceedings of the National Academy of Science, volume 99, pages 6163-6168, 2002.