Examination of key intermediates in the catalytic cycle of aspartate-β-semialdehyde dehydrogenase from a Gram-positive infectious bacteria

Journal of Biological Chemistry

Volumn 281, Issue 41, 2006, Pages 31031-31040

  Faehnle, Christopher R ^a   Le Coq, Johanne ^a   Liu, Xuying ^a   Viola, Ronald E ^a  

^a UNIVERSITY OF TOLEDO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APOENZYME; MAMMALS; NUCLEOTIDES;

AMINO ACIDS; ANTIBIOTICS; BIOSYNTHESIS; CATALYSIS; COENZYMES; ENZYME KINETICS; SUBSTRATES;

BACTERIA;

ASPARTATE SEMIALDEHYDE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME STRUCTURE; ENZYME SYNTHESIS; GRAM POSITIVE BACTERIUM; NONHUMAN; PRIORITY JOURNAL; STOICHIOMETRY; STREPTOCOCCUS PNEUMONIAE; THERMODYNAMICS;

ARCHAEA; ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; CALORIMETRY; CATALYSIS; CATALYTIC DOMAIN; GRAM-POSITIVE BACTERIA; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; STREPTOCOCCUS PNEUMONIAE; THERMODYNAMICS;

ARCHAEA; BACTERIA (MICROORGANISMS); MAMMALIA; NEGIBACTERIA; POSIBACTERIA; STREPTOCOCCUS PNEUMONIAE;

EID: 33750059773     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605926200     Document Type: Article

References (26)

1. Becker, D., Selbach, M., Rollenhagen, C., Ballmaier, M., Meyer, T. F., Mann, M., and Bumann, D. (2006) Nature 440, 303-307
2. Viola, R. E. (2001) Acc. Chem. Res. 34, 339-349
3. Cohen, G. N., and Dautry-Varsat, A. (1980) in Multifunctional Proteins (Bisswanger, H., and Schmincke-Ott, E., eds) pp. 49-121, John Wiley & Sons, Inc., New York
4. Paidhungat, M., Setlow, B., Driks, A., and Setlow, P. (2000) J. Bacteriol. 182, 5505-5512
5. Pavelka, M. S., and Jacobs, W. R. (1996) J. Bacteriol. 178, 6496-6507
6. Harb, O. S., and Kwaik, Y. A. (1998) Infect. Immun. 66, 1898-1903
7. Cirillo, J. D., Weisbrod, T. R., Pascopella, L., Bloom, B. R., and Jacobs, W. R. (1994) Mol. Microbiol. 11, 629-639
8. Kobayashi, K., Ehrlich, S. D., Albertini, A., Amati, G., Anderson, K. K., Arnaud, M., Asai, K., Ashikaga, S., Aymerich, S., Bessieres, P., Boland, F., Brignell, S. C., Bron, S., Bunai, K., Chapuis, J., Christiansen, L. C., Danchin, A., Debarbouille, M., Dervyn, E., Deuerling, E., Devine, K., Devine, S. K., Dreesen, O., Errington, J., Fillinger, S., Foster, S. J., Fujita, Y., Galizzi, A., Gardan, R., Eschevins, C., Fukushima, T., Haga, K., Harwood, C. R., Hecker, M., Hosoya, D., Hullo, M. F., Kakeshita, H., Karamata, D., Kasahara, Y., Kawamura, F., Koga, K., Koski, P., Kuwana, R., Imamura, D., Ishimara, M., Ishikawa, S., Ishio, I., Le Coq, D., Masson, A., Mauel, C., Meima, R., Mellado, R. P., Moir, A., Moriya, S., Nagakawa, E., Nanamiya, H., Nakai, S., Nygaard, P., Ogura, M., Ohanan, T., O'Reilly, M., O'Rourke, M., Pragai, Z., Pooley, H. M., Rapoport, G., Rawlins, J. P., Rivas, L. A., Rivolta, C., Sadaie, A., Sadaie, Y., Sarvas, M., Sato, T., Saxild, H. H., Scanlan, E., Schumann, W., Seegers, J. F. M. L., Sekiguchi, J., Sekowska, A., Seror, S. J., Simon, M., Stragier, P., Studer, R., Takamatsu, H., Tanaka, T., Takeuchi, M., Thomaides, H. B., Vagner, V., van Dijl, J. M., Watabe, K., Wipat, A., Yamamoto, H., Yamamoto, M., Yamamoto, Y., Yamane, K., Yata, K., Yoshida, K., Yoshikawa, H., Zuber, U., and Ogasawara, N. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 4678-4683
9. Mei, J. M., Nourbakhsh, F., Ford, C. W., and Holden, D. W. (1997) Mol. Microbiol. 26, 399-407
10. Hadfield, A. T., Kryger, G., Ouyang, J., Petsko, G. A., Ringe, D., and Viola, R. E. (1999) J. Mol. Biol. 289, 991-1002
11. Hadfield, A. T., Shammas, C., Kryger, G., Ringe, D., Petsko, G. A., Ouyang, J., and Viola, R. E. (2001) Biochemistry 40, 14475-14483
12. Blanco, J., Moore, R. A., Kalabeeswaran, V., and Viola, R. E. (2003) Protein Sci. 12, 27-33
13. Faehnle, C. R., Ohren, J. F., and Viola, R. E. (2005) J. Mol. Biol. 353, 1055-1068
14. Blanco, J., Moore, R. A., and Viola, R. E. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 12613-12617
15. Cleland, W. W. (1979) Methods Enzymol. 63, 103-138
16. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
17. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
18. Perrakis, A., Harkiolaki, M., Wilson, K. S., and Lamzin, V. S. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1445-1450
19. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 122-133
20. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
21. Tsodikov, O. V., Record, M. T., and Sergeev, Y. V. (2002) J. Comput. Chem. 23, 600-609
22. Moore, R. A., Bocik, W. E., and Viola, R. E. (2002) Protein Expression Purif. 25, 189-194
23. Hayward, S., and Lee, R. A. (2002) J. Mol. Graphics 21, 181-183
24. Biellmann, J. F., Eid, P., and Hirth, C. (1980) Eur. J. Biochem. 104, 59-64
25. Karsten, W. E., and Viola, R. E. (1991) Biochim. Biophys. Acta 1077, 209-219
26. Biellmann, J. F., Eid, P., Hirth, C., and Jornvall, H. (1980) Eur. J. Biochem. 104, 53-58