Simulation of FT-IR spectra and 2D-COS analysis for the H/D exchange of two related ligands

Journal of Molecular Structure

Volumn 799, Issue 1-3, 2006, Pages 153-157

  Iloro, Ibon ^a   Pastrana Rios, Belinda ^a  

^a UNIVERSITY OF PUERTO RICO   (Puerto Rico)

Author keywords

2D COS; ATR; FT IR spectroscopy; Hydrogen deuterium exchange; Kinetics; Simulations

Indexed keywords

2D-COS; ATTENUATED TOTAL REFLECTANCE (ATR); HYDROGEN/DEUTERIUM EXCHANGE; LIGANDS;

COMPUTER SIMULATION; CORRELATION METHODS; DEUTERIUM; HYDROGEN; ION EXCHANGE; KINETIC THEORY; PHASE TRANSITIONS; PROTEINS; PROTONS;

FOURIER TRANSFORM INFRARED SPECTROSCOPY;

EID: 33750029931     PISSN: 00222860     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molstruc.2006.03.032     Document Type: Article

References (20)

1. Haris P.I., and Chapman D. The conformational analysis of peptides using Fourier transform IR spectroscopy. Biopolymers 37 (1995) 251-263
2. Goormaghtigh E., deJongh H.H.J., and Ruysschaert J.M. Relevance of protein thin films prepared for attenuated total reflection Fourier transform infrared spectroscopy: significance of the pH. Applied Spectroscopy 50 (1996) 1519-1527
3. Graff D.K., PastranaRios B., Venyaminov S.Y., and Prendergast F.G. The effects of chain length and thermal denaturation on helix-forming peptides: a mode-specific analysis using 2D FT-IR. Journal of the American Chemical Society 119 (1997) 11282-11294
4. Nabet A., and Pezolet M. Two-dimensional FT-IR spectroscopy: a powerful method to study the secondary structure of proteins using H-D exchange. Applied Spectroscopy 51 (1997) 466-469
5. Pastrana-Rios B. Mechanism of unfolding of a model helical peptide. Biochemistry 40 (2001) 9074-9081
6. Pastrana-Rios B., et al. Centrin: its secondary structure in the presence and absence of cations. Biochemistry 41 (2002) 6911-6919
7. Silva R.A.G.D., Nguyen J.Y., and Decatur S.M. Probing the effect of side chains on the conformation and stability of helical peptides via isotope-edited infrared spectroscopy. Biochemistry 41 (2002) 15296-15303
8. Ozaki Y., Murayama K., Wu Y., and Czarnik-Matusewicz B. Two-dimensional infrared correlation spectroscopy studies on secondary structures and hydrogen bondings of side chains of proteins. Spectroscopy - An International Journal 17 (2003) 79-100
9. Sanoguet-Carrero Z., and Pastrana-Rios B. FT-IR spectroscopy characterization of phosphorylated Chlamydomonas centrin. Biophysical Journal 84 (2003) 336A
10. Camacho C., Narvaez D., Ferguson K.M., and Pastrana-Rios B. Recombinant soluble epidermal growth factor receptor (sEGFR) hydrogen/deuterium exchange studies using ATR FT-IR spectroscopy. Biophysical Journal 86 (2004) 500A
11. Guillen N., Camacho C.M., Narvaez D., Cora E., and Pastrana-Rios B. EGFR family of ligands hydrogen/deuterium exchange. Protein Science 13 (2004) 162-163
12. Seda C., Sanoguet-Carrero Z., Campbell M., Lebron R., and Pastrana-Rios B. Understanding the effect of phosphorylation in recombinant Chlamydomonas centrin. Protein Science 13 (2004) 150-151
13. Narvaez D., Camacho C.M., Ferguson K.M., and Pastrana-Rios B. Hydrogen/deuterium exchange studies of recombinant soluble epidermal growth factor receptor (sEGFR). Protein Science 13 (2004) 216-217
14. Ortiz M., et al. Dynamics of hydrogen - deuterium exchange in Chlamydomonas centrin. Biochemistry 44 (2005) 2409-2418
15. Arrondo J.L.R., Muga A., Castresana J., and Gofñ F.M. Quantitative studies of the structure of proteins in solution by Fourier-Transform Infrared Spectroscopy. Progress in Biophysics and Molecular Biology 59 (1993) 23-56
16. Fabian H., and Mantele W. Infrared spectroscopy of proteins. In: Meyers R.A. (Ed). Encyclopedia of Analytical Chemistry: Applications Theory and Instrumentation (2003), John Wiley and Sons Ltd. 1-25
17. Chirgadze Y.N., Fedoroy V., and Trushina N.P. Estimation of amino acid residue side-chain absorption in the infrared spectra of protein solutions in heavy. Water Biopolymers 14 (1975) 679-694
18. Czarneck M.A. Two-dimensional correlation spectroscopy: effect of band position, width, and intensity changes on correlation intensities. Applied Spectroscopy 54 (1999) 975-977
19. Raussens V., Ruysschaert J.M., and Goormaghtigh E. Analysis of 1H/2H exchange kinetics using model infrared spectra. Applied Spectroscopy 58 (2004) 68-82
20. Noda I. Advances in two-dimensional correlation spectroscopy. Vibrational Spectroscopy 36 (2004) 143-165