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Volumn 22, Issue 19, 2006, Pages 2381-2387

Joint estimation of calibration and expression for high-density oligonucleotide arrays

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOIDOSIS; ARTICLE; BIOASSAY; CALIBRATION; DNA MICROARRAY; ENZYME LINKED IMMUNOSORBENT ASSAY; GENE EXPRESSION; GENETIC ALGORITHM; HELA CELL; HUMAN; MATHEMATICAL ANALYSIS; METHODOLOGY; PRIORITY JOURNAL; STATISTICAL MODEL;

EID: 33750029069     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl399     Document Type: Article
Times cited : (5)

References (19)
  • 1
    • 11244343326 scopus 로고    scopus 로고
    • Functional gene expression analysis of clonal plasma cells identifies a unique molecular profile for light chain amyloidosis
    • Abraham,R. et al. (2005) Functional gene expression analysis of clonal plasma cells identifies a unique molecular profile for light chain amyloidosis. Blood, 105, 794-803.
    • (2005) Blood , vol.105 , pp. 794-803
    • Abraham, R.1
  • 3
    • 33750019667 scopus 로고    scopus 로고
    • An exploration of affymetrix probe-set intensities in spike-in experiments
    • Technical Report No. 74, Department of Health Sciences Research, Mayo Clinic, Rochester, MN
    • Ballman,K.V. and Therneau,T.M. (2005) An exploration of affymetrix probe-set intensities in spike-in experiments. Technical Report No. 74, Department of Health Sciences Research, Mayo Clinic, Rochester, MN.
    • (2005)
    • Ballman, K.V.1    Therneau, T.M.2
  • 4
    • 8844271685 scopus 로고    scopus 로고
    • Faster cyclic loess: Normalizing RNA arrays via linear models
    • Ballman,K.V. et al. (2004) Faster cyclic loess: Normalizing RNA arrays via linear models. Bioinformatics, 20, 2778-2786.
    • (2004) Bioinformatics , vol.20 , pp. 2778-2786
    • Ballman, K.V.1
  • 5
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high-density oligonucleotide array data based on variance and bias
    • Bolstad,B.M. et al. (2003) A comparison of normalization methods for high-density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1
  • 6
    • 26444470066 scopus 로고    scopus 로고
    • Statistical analysis of adsorption models for oligonucleotide microarrays
    • Article 35
    • Burden,C.J. et al. (2004) Statistical analysis of adsorption models for oligonucleotide microarrays. Stat Appl. Genetic Mol. Biol., 3, Article 35.
    • (2004) Stat Appl. Genetic Mol. Biol. , vol.3
    • Burden, C.J.1
  • 7
    • 1342330572 scopus 로고    scopus 로고
    • A benchmark for affymetrix genechip expression measures
    • Cope,L.M. et al. (2004) A benchmark for affymetrix genechip expression measures. Bioinformatics, 20, 323-331.
    • (2004) Bioinformatics , vol.20 , pp. 323-331
    • Cope, L.M.1
  • 8
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying genes with differential expression in replicated cdna microarray experiments
    • Dudoit,S. et al. (2002) Statistical methods for identifying genes with differential expression in replicated cdna microarray experiments. Statistica Sinica, 12, 111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1
  • 9
    • 0037278924 scopus 로고    scopus 로고
    • Treatment of microarray experiments as split-plot designs
    • Emptage,M.R. et al. (2003) Treatment of microarray experiments as split-plot designs. Biopharm. Stat., 13, 159-178.
    • (2003) Biopharm. Stat. , vol.13 , pp. 159-178
    • Emptage, M.R.1
  • 10
    • 0017027980 scopus 로고
    • Radioligand assay
    • Finney,D.J. (1976) Radioligand assay. Biometrics, 32, 721-740.
    • (1976) Biometrics , vol.32 , pp. 721-740
    • Finney, D.J.1
  • 11
    • 0037388263 scopus 로고    scopus 로고
    • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
    • Hekstra,D. et al. (2003) Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res., 31, 1962-1968.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1962-1968
    • Hekstra, D.1
  • 12
    • 33750025561 scopus 로고    scopus 로고
    • Comparison of affymetrix genechip expression measures
    • Technical Report Working Paper 86, Johns Hopkins University, Department of Biostatistics Working Papers
    • Irizarry,R.A., Wu,Z. and Jaffee,H.A. (2005) Comparison of affymetrix genechip expression measures. Technical Report Working Paper 86, Johns Hopkins University, Department of Biostatistics Working Papers.
    • (2005)
    • Irizarry, R.A.1    Wu, Z.2    Jaffee, H.A.3
  • 13
    • 0037188875 scopus 로고    scopus 로고
    • Normalization and analysis of DNA microarray data by self-consistency and local regression
    • research0037.1-research0037.12
    • Kepler,T.B. et al. (2002) Normalization and analysis of DNA microarray data by self-consistency and local regression. Genome Biol., 3, research0037.1- research0037.12.
    • (2002) Genome Biol. , vol.3
    • Kepler, T.B.1
  • 14
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr,M.K. et al. (2000) Analysis of variance for gene expression microarray data. J. Comput. Biol., 7, 819-837.
    • (2000) J. Comput. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1
  • 16
    • 85035214096 scopus 로고    scopus 로고
    • Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
    • Naef,F. and Magnasco,M.O. (2003) Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 68, 011904-011906.
    • (2003) Phys. Rev. E Stat. Nonlin. Soft Matter Phys. , vol.68 , pp. 011904-011906
    • Naef, F.1    Magnasco, M.O.2
  • 17
    • 0037317033 scopus 로고    scopus 로고
    • A study of accuracy and precision in oligonucleotide arrays: Extracting more signal at large concentrations
    • Naef,F. et al. (2003) A study of accuracy and precision in oligonucleotide arrays: Extracting more signal at large concentrations. Bioinformatics, 19, 178-184.
    • (2003) Bioinformatics , vol.19 , pp. 178-184
    • Naef, F.1
  • 18
    • 27644521019 scopus 로고    scopus 로고
    • Stochastic models inspired by hybridization theory for short oligonucleotide arrays
    • [extended abstract]. San Diego, CA. RECOMB, Copyright 2004 ACM 1-58113-755-9/04/0003
    • Wu,Z. and Irizarry,R. (2004) Stochastic models inspired by hybridization theory for short oligonucleotide arrays [extended abstract]. San Diego, CA. RECOMB, Copyright 2004 ACM 1-58113-755-9/04/0003.
    • (2004)
    • Wu, Z.1    Irizarry, R.2
  • 19
    • 10844290766 scopus 로고    scopus 로고
    • A model-based background adjustment for oligonucleotide expression arrays
    • Wu,Z. et al. (2004) A model-based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Assoc., 99, 909-917.
    • (2004) J. Am. Stat. Assoc. , vol.99 , pp. 909-917
    • Wu, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.