Flexible versus rigid tile assembly

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4135 LNCS, Issue , 2006, Pages 139-151

  Jonoska, Nataša ^a   McColm, Gregory L ^a  

^a UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATION THEORY; GRAPH THEORY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS;

DNA MOLECULES; FLEXIBLE TILES; JUNCTION MOLECULES;

DNA;

EID: 33750006273     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11839132_12     Document Type: Conference Paper

References (17)

1. Cambridge Structural Database, Cambridge Crystallographic Data Centre, on-line at 〈http://www.ccdc.cam.ac.uk/〉.
2. A. Carbone, N.C. Seeman, Molecular tiling and DNA self-assembly, in Aspects of Molecular Computing (N. Jorioska, Gh. Pǎun, G. Rozenberg eels.), Springer LNCS 2950 (2004) 61-84.
3. G.R. Desiraju, Crystal Engineering: the Design of Organic Solids (Elsevier, 1989).
4. M.D. Foster, M.M J. Treacy, J.B. Higgins, I. Rivin, E. Balkovsky, K.H. Randall, A systematic topological search for the framework of ZSM-10, J. Appl. Crystallography 38 (2005), 1028-1030. This group maintains an on-line searchable database at 〈http://www.hypotheticalzeolites.net/〉.
5. N. Jonoska, P. Sa-Ardyen, N.C. Seeman. Computation by self-assembly of DNA grnphs, Genetic Programming and Evolvable Machines 4 (2003) 123-137.
6. N. Jonoska, S. Liao, N.C. Seernan, Transducers with Programmable Input by DNA Self-assembly, in: Aspects of Molecular Computing (N. Jonoska, Gh. Pǎun, G. Rozenberg eds.), Springer LNCS 2950 (2004) 219-240.
7. N. Jonoska, S. Karl, M. Saito, Three dimensional DNA structures in computing, BioSystems 52 (1999) 143-153.
8. N. Jonoska, G.L. McColm, A Computational Model for Flexible Self-Assembling DNA Tiles, Proc. 4th Internat'l Conf. Unconv. Comp. (Spring LNCS 3699, 2005), 142-156.
9. N. Jonoska, G.L.McColm, From rigid tiles to flexible and back, (in preparation).
10. P. Rothemund, N. Papadakis, E. Winfree, Algorithmic Self-assembly of DNA Sierpinski Triangles, PLoS Biology 2(12) (2004) available at http://biology. plosjournals.org/
11. P.W.K. Rothemund, E. Winfree, The Program-Size Complexity of Self-Assembled Squares, Proceedings of 33rd ACM meeting STOC 2001, Portland, Oregon, May 21-23 (2001) 459-468.
12. P. Sa-Ardyen, N. Jonoska, N. Seeman, Self-assembling DNA graphs, Natural Computing 2 No.4 (2003) 427-438.
13. R.F. Service, How Far Can We Push Chemical Self-Assembly? Science 309:5731 (1 July, 2005), 95.
14. E. Winfree, Self healing tile sets in Nanotechnology: Science and Computation (J. Chen, N. Jonoska, G. Rozenberg eds.) Springer-Verlag, 55-74, 2005.
15. E. Winfree, X. Yang, N. C. Seeman, Universal computation via self-assembly of DNA: some theory and experiments, in: L. Landweber & E. Baum, eds., DNA based computers II (AMS DIMACS series 44, 1998), 191-214.
16. E. Winfree, F. Liu, L.A. Wenzler, N.C. Seeman, Design and self-assembly of two-dimensional DNA crystals, Nature 394 (1998), 539-544.
17. M. J. Zaworotko, Superstructural diversity in two dimensions: crystal engineering of laminated solids, Chemical Communications (2001, Issue 1), 1-9.