Structure-based functional annotation: Yeast ymr099c codes for a D-hexose-6-phosphate mutarotase

Journal of Biological Chemistry

Volumn 281, Issue 40, 2006, Pages 30175-30185

  Graille, Marc ^a   Baltaze, Jean Pierre ^b   Leulliot, Nicolas ^a   Liger, Dominique ^a   Quevillon Cheruel, Sophie ^a   Van Tilbeurgh, Herman ^a  

^a INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^b UNIVERSITÉ PARIS SUD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMATIC FUNCTIONS; GALACTOSE MUTAROTASE; PROTEIN SEQUENCES;

BIOSYNTHESIS; CRYSTAL STRUCTURE; GENES; MOLECULAR BIOLOGY; PHOSPHATES; SUBSTRATES;

ENZYMES;

ARGININE; FRUCTOSE 6 PHOSPHATE; GALACTOSE; GLUCOSE; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; LIGAND; MANNOSE 6 PHOSPHATE; PHOSPHATE; RIBOSE 5 PHOSPHATE; SULFATE;

AMINO ACID SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; ENZYME SPECIFICITY; GENOMICS; LIGAND BINDING; MOLECULAR MIMICRY; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN STRUCTURE; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; CARBOHYDRATE EPIMERASES; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; HEXOSEPHOSPHATES; MOLECULAR SEQUENCE DATA; PROTEIN FOLDING; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY;

SACCHAROMYCES CEREVISIAE;

EID: 33749562734     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M604443200     Document Type: Article

References (43)

1. Karp, P. D. (2004) Genome Biol. 5, 401
2. Lespinet, O., and Labedan, B. (2005) Science 307, 42
3. Roberts, R. J. (2004) PLoS Biol. 2, E42
4. Kuhn, P., Lesley, S. A., Mathews, II, Canaves, J. M., Brinen, L. S., Dai, X., Deacon, A. M., Elsliger, M. A., Eshaghi, S., Floyd, R., Godzik, A., Grittini, C., Grzechnik, S. K., Guda, C., Hodgson, K. O., Jaroszewski, L., Karlak, C., Klock, H. E., Koesema, E., Kovarik, J. M., Kreusch, A. T., McMullan, D., McPhillips, T. M., Miller, M. A., Miller, M., Morse, A., Moy, K., Ouyang, J., Robb, A., Rodrigues, K., Selby, T. L., Spraggon, G., Stevens, R. C., Taylor, S. S., van den Bedem, H., Velasquez, J., Vincent, J., Wang, X., West, B., Wolf, G., Wooley, J., and Wilson, I. A. (2002) Proteins 49, 142-145
5. Mathews, II, Deacon, A. M., Canaves, J. M., McMullan, D., Lesley, S. A., Agarwalla, S., and Kuhn, P. (2003) Structure 11, 677-690
6. Quevillon-Cheruel, S., Liger, D., Leulliot, N., Graille, M., Poupon, A., de La Sierra-Gallay, I. L., Zhou, C. Z., Collinet, B., Janin, J., and Van Tilbeurgh, H. (2004) Biochimie. (Paris) 86, 617-623
7. Schuldiner, O., Yanover, C., and Benvenisty, N. (1998) Curr. Genet. 33, 16-20
8. Hazbun, T. R., Malmstrom, L., Anderson, S., Graczyk, B. J., Fox, B., Riffle, M., Sundin, B. A., Aranda, J. D., McDonald, W. H., Chiu, C. H., Snydsman, B. E., Bradley, P., Muller, E. G., Fields, S., Baker, D., Yates, J. R., 3rd, and Davis, T. N. (2003) Mol. Cell 12, 1353-1365
9. Takaku, H., Minagawa, A., Takagi, M., and Nashimoto, M. (2003) Nucleic Acids Res. 31, 2272-2278
10. Chen, Y., Beck, A., Davenport, C., Shattuck, D., and Tavtigian, S. V. (2005) BMC Mol. Biol. 6, 12
11. Thoden, J. B., and Holden, H. M. (2002) J. Biol. Chem. 277, 20854-20861
12. Wurster, B., and Hess, B. (1972) FEBS Lett. 23, 341-344
13. Wurster, B., and Hess, B. (1974) Hoppe Seylers Z Physiol. Chem. 355, 255-265
14. Wurster, B., and Hess, B. (1975) Methods Enzymol. 41, 488-493
15. Chance, E. M., Hess, B., Plesser, T., and Wurster, B. (1975) Eur. J. Biochem. 50, 419-424
16. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800
17. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
18. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
19. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
20. Thoden, J. B., Timson, D. J., Reece, R. J., and Holden, H. M. (2004) J. Biol. Chem. 279, 23431-23437
21. Thoden, J. B., and Holden, H. M. (2005) J. Biol. Chem. 280, 21900-21907
22. Jacobson, R. H., Zhang, X. J., DuBose, R. F., and Matthews, B. W. (1994) Nature 369, 761-766
23. Egloff, M. P., Uppenberg, J., Haalck, L., and van Tilbeurgh, H. (2001) Structure (Camb) 9, 689-697
24. Holden, H. M., Rayment, I., and Thoden, J. B. (2003) J. Biol. Chem. 278, 43885-43888
25. Thoden, J. B., Kim, J., Raushel, F. M., and Holden, H. M. (2002) J. Biol. Chem. 277, 45458-45465
26. Thoden, J. B., Kim, J., Raushel, F. M., and Holden, H. M. (2003) Protein Sci. 12, 1051-1059
27. Majumdar, S., Ghatak, J., Mukherji, S., Bhattacharjee, H., and Bhaduri, A. (2004) Eur. J. Biochem. 271, 753-759
28. Li de la Sierra, I., Munier-Lehmann, H., Gilles, A. M., Barzu, O., and Delarue, M. (2001) J. Mol. Biol. 311, 87-100
29. Li de la Sierra-Gallay, I., Collinet, B., Graille, M., Quevillon-Cheruel, S., Liger, D., Minard, P., Blondeau, K., Henckes, G., Aufrere, R., Leulliot, N., Zhou, C. Z., Sorel, I., Ferrer, J. L., Poupon, A., Janin, J., and van Tilbeurgh, H. (2004) Proteins 54, 776-783
30. Ryu, K. S., Kim, C., Park, C., and Choi, B. S. (2004) J. Am. Chem. Soc. 126, 9180-9181
31. Meyer, B., and Peters, T. (2003) Angew Chem. Int. Ed Engl. 42, 864-890
32. Ryu, K. S., Kim, C., Kim, I., Yoo, S., Choi, B. S., and Park, C. (2004) J. Biol. Chem. 279, 25544-25548
33. Howard, S. M., and Heinrich, M. R. (1965) Arch. Biochem. Biophys. 110, 395-400
34. Pauly, H. E., and Pfleiderer, G. (1975) Hoppe Seylers Z Physiol. Chem. 356, 1613-1623
35. Livingstone, G., Franks, F., and Aspinall, L. J. (1977) J. Sol. Chem. 6, 203-216
36. Frey, P. A. (1996) Faseb J. 10, 461-470
37. Petry, K. G., and Reichardt, J. K. (1998) Trends Genet. 14, 98-102
38. Novelli, G., and Reichardt, J. K. (2000) Mol. Genet. Metab. 71, 62-65
39. Assairi, L., Bertrand, T., Ferdinand, J., Slavova-Azmanova, N., Christensen, M., Briozzo, P., Schaeffer, F., Craescu, C. T., Neuhard, J., Barzu, O., and Gilles, A. M. (2004) Protein Sci. 13, 1295-1303
40. Ryu, K. S., Kim, J. I., Cho, S. J., Park, D., Park, C., Cheong, H. K., Lee, J. O., and Choi, B. S. (2005) J. Mol. Biol. 349, 153-162
41. Rose, I. A., O'Connell, E. L., and Schray, K. J. (1973) J. Biol. Chem. 248, 2232-2234
42. Nogae, I., and Johnston, M. (1990) Gene (Amst.) 96, 161-169
43. Salas, M., Vinuela, E., and Sols, A. (1965) J. Biol. Chem. 240, 561-568