Factors affecting flow karyotype resolution

Cytometry Part A

Volumn 69, Issue 9, 2006, Pages 1028-1036

  Ng, Bee Ling ^a   Carter, Nigel P ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

Chromosomes; Flow cytometry; Flow karyotype; High speed sorting; Metaphase; Purity; Resolution

Indexed keywords

INORGANIC SALT;

ANALYTIC METHOD; ANIMAL CELL; ARTICLE; B LYMPHOCYTE; CELL ISOLATION; CELL LINE; CHROMOSOME ISOLATION; DEVICE; FIBROBLAST; FLOW CYTOMETRY; FLOW KARYOTYPE; HUMAN; HUMAN CELL; KARYOTYPE; KARYOTYPING; LASER; LYMPHOBLASTOID CELL; NONHUMAN; PH; PRIORITY JOURNAL; STAINING; VELOCITY;

ANIMALS; BUFFERS; CELL LINE; CHROMOSOMES; HUMANS; HYDROGEN-ION CONCENTRATION; KARYOTYPING; MALE; STAINING AND LABELING;

EID: 33749495699     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.20330     Document Type: Article

References (42)

1. Fuscoe JC, McNinch JS, Collins CC, Van Dilla MA. Human chromosome-specific DNA libraries: Construction and purity analysis. Cytogenet Cell Genet 1989;50:211-215.
2. Deaven LL, Van Dilla MA, Bartholdi MF, Carrano AV, Cram LS, Fuscoe JC, Gray JW, Hildebrand CE, Moyzis RK, Perlman J. Construction of human chromosome-specific DNA libraries from flow-sorted chromosomes. Cold Spring Harb Symp Quant Biol 1986;51 (Part 1):159-167.
3. Fuscoe JC, Clark LM, Van Dilla MA. Construction of fifteen human chromosome-specific DNA libraries from flow-purified chromosomes. Cytogenet Cell Genet 1986;43(1/2):79-86.
4. Fuscoe JC. Human chromosome-specific DNA libraries: Use of an oligodeoxynucleotide probe to detect non-recombinants. Gene 1987;52(2/3):291- 296.
5. Van Dilla MA, Deaven LL. Construction of gene libraries for each human chromosome. Cytometry 1990;11:208-218.
6. Lalande M, Kunkel LM, Flint A, Latt SA. Development and use of metaphase chromosome flow-sorting methodology to obtain recombinant phage libraries enriched for parts of the human X chromosome. Cytometry 1984;5:101-107.
7. Fantes JA, Green DK, Sharkey A. Chromosome sorting by flow cytometry. Production of DNA libraries and gene mapping. Methods Mol Biol 1994;29:205-219.
8. Gribble SM, Prigmore E, Burford DC, Porter KM, Ng BL, Douglas EJ, Fiegler H, Carr P, Kalaitzopoulos D, Clegg S, Sandstrom R, Temple IK, Youings SA, Thomas NS, Dennis NR, Jacobs PA, Crolla JA, Carter NP. The complex nature of constitutional de novo apparently balanced translocations in patients presenting with abnormal phenotypes. J Med Genet 2005;42:8-16.
9. Fiegler H, Gribble SM, Burford DC, Carr P, Prigmore E, Porter KM, Clegg S, Crolla JA, Dennis NR, Jacobs P, Carter NP. Array painting: A method for the rapid analysis of aberrant chromosomes using DNA microarrays. J Med Genet 2003;40:664-670.
10. Gribble S, Ng BL, Prigmore E, Burford DC, Carter NP. Chromosome paints from single copies of chromosomes. Chromosome Res 2004;12:143-151.
11. Gribble SM, Fiegler H, Burford DC, Prigmore E, Yang F, Carr P, Ng BL, Sun T, Kamberov ES, Makarov VL, Langmore JP, Carter NP. Applications of combined DNA microarray and chromosome sorting technologies. Chromosome Res 2004;12:35-43.
12. Woodfine K, Fiegler H, Beare DM, Collins JE, McCann OT, Young BD, Debernardi S, Mott R, Dunham I, Carter NE Replication timing of the human genome. Hum Mol Genet 2004;13:191-202.
13. Fauth C, Gribble SM, Porter KM, Codina-Pascual M, Ng BL, Kraus J, Uhrig S, Leifheit J, Haaf T, Fiegler H, Carter NP, Speicher MR. Microarray analyses decipher exceptional complex familial chromosomal rearrangement. Hum Genet 2006:1-9.
14. Fiegler H, Carter NP. Genomic array technology. Methods Cell Biol 2004;75:769-785.
15. Woodfine K, Carter NP, Dunham I, Fiegler H. Investigating chromosome organization with genomic microarrays. Chromosome Res 2005;13:249-257.
16. Sillar R, Young BD. A new method for the preparation of metaphase chromosomes for flow analysis. J Histochem Cytochem 1981;29:74-78.
17. Bijman JT. Optimization of mammalian chromosome suspension preparations employed in a flow cytometric analysis. Cytometry 1983;3:354-358.
18. van den Engh G, Trask B, Cram S. Bartholdi M. Preparation of chromosome suspensions for flow cytometry. Cytometry 1984;5:108-117.
19. Matsson P, Rydberg B. Analysis of chromosomes from human peripheral lymphocytes by flow cytometry. Cytometry 1981;1:369-372.
20. Young BD, Ferguson-Smith MA, Sillar R, Boyd E. High-resolution analysis of human peripheral lymphocyte chromosomes by flow cytometry. Proc Natl Acad Sci USA 1981;78:7727-7731.
21. van den Engh GJ, Trask BJ, Gray JW. The binding kinetics and interaction of DNA fluorochromes used in the analysis of nuclei and chromosomes by flow cytometry. Histochemistry 1986;84(4-6):501-508.
22. van den Engh G, Trask B, Lansdorp P, Gray J. Improved resolution of flow cytometric measurements of Hoechst- and chromomycin-A3-stained human chromosomes after addition of citrate and sulfite. Cytometry 1988;9:266-270.
23. van den Engh GJ, Trask BJ, Gray JW, Langlois RG, Yu LC. Preparation and bivariate analysis of suspensions of human chromosomes. Cytometry 1985;6:92-100.
24. Yu LC, Aten J, Gray J, Carrano AV. Human chromosome isolation from short-term lymphocyte culture for flow cytometry. Nature 1981;293(5828):154,155.
25. Rabbitts P, Impey H, Heppell-Parton A, Langford C, Tease C, Lowe N, Bailey D, Ferguson-Smith M, Carter N. Chromosome specific paints from a high resolution flow karyotype of the mouse. Nat Genet 1995;9:369-375.
26. Cram LS, Bartholdi MF, Ray FA, Travis GL, Kraemer PM. Spontaneous neoplastic evolution of Chinese hamster cells in culture: Multistep progression of karyotype. Cancer Res 1983;43:4828-4837.
27. Blumenthal AB, Dieden JD, Kapp LN, Sedat JW. Rapid isolation of metaphase chromosomes containing high molecular weight DNA. J Cell Biol 1979;81:255-259.
28. Wray W, Stubblefield E. A new method for the rapid isolation of chromosomes, mitotic apparatus, or nuclei from mammalian fibroblasts at near neutral pH. Exp Cell Res 1970;59:469-478.
29. Buys CH, Koerts T, Aten JA. Well-identifiable human chromosomes isolated from mitotic fibroblasts by a new method. Hum Genet 1982;61:157-159.
30. Wray W. Isolation of metaphase chromosomes with high molecular weight DNA at pH 10.5. Methods Cell Biol 1973;6:307-315.
31. Pelta J, Livolant F, Sikorav JL. DNA aggregation induced by polyamines and cobalthexamine. J Biol Chem 1996;271:5656-5662.
32. Tabor H. The protective effect of spermine and other polyamines against heat denaturation of deoxyribonucleic acid. Biochemistry 1962;1:496-501.
33. Wilson RW, Bloomfield VA. Counterion-induced condesation of deoxyribonucleic acid. A light-scattering study. Biochemistry 1979;18:2192-2196.
34. 6. J Mol Biol 1980;144:431-453.
35. Manning GS. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q Rev Biophys 1978;11:179-246.
36. Bloomfield VA. DNA condensation by multivalent cations. Biopolymers 1997;44:269-282.
37. Raspaud E, Olvera de la Cruz M, Sikorav JL, Livolant F. Precipitation of DNA by polyamines: A polyelectrolyte behavior. Biophys J 1998;74:381-393.
38. Gray JW, Cram LS. Flow karyotyping and chromosome sorting. In: Melamed MR, Lindmo T, Mendelsohn ML, editors. Flow Cytometry and Sorting, 2nd ed. New York: Wiley-Liss; 1990. pp 503-529.
39. Gray JW, Dean PN, Fuscoe JC, Peters DC, Trask BJ, van den Engh GJ, Van Dilla MA. High-speed chromosome sorting. Science 1987;238(4825):323-329.
40. Behr W, Honikel K, Hartmann G. Interaction of the RNA polymerase inhibitor chromomycin with DNA. Eur J Biochem 1969;9:82-92.
41. Langlois RG, Jensen RH. Interactions between pairs of DNA-specific fluorescent stains bound to mammalian cells. J Histochem Cytochem 1979;27:72-79.
42. Latt SA, Sahar E, Eisenhard ME, Juergens LA. Interactions between pairs of DNA-binding dyes: Results and implications of chromosome analysis. Cytometry 1980;1:2-12.