Applications of computational algorithm tools to identify functional SNPs in cytokine genes

Cytokine

Volumn 35, Issue 1-2, 2006, Pages 62-66

  Shen, Jie ^a,c   Deininger, Prescott L ^a,b   Zhao, Hua ^a,b,c  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b TULANE UNIVERSITY   (United States)

^c ROSWELL PARK CANCER INSTITUTE   (United States)

Author keywords

Computational algorithm; Cytokine; SNP

Indexed keywords

AMINO ACID; CYTOKINE; PROTEIN;

3' UNTRANSLATED REGION; ALGORITHM; AMINO ACID SUBSTITUTION; ARTICLE; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC VARIABILITY; IMMUNOPATHOLOGY; MATHEMATICAL COMPUTING; PHENOTYPIC VARIATION; POLYPHENISM; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURE ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; CYTOKINES; DATABASES, NUCLEIC ACID; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 33749254585     PISSN: 10434666     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cyto.2006.07.008     Document Type: Article

References (19)

1. Nussbaum R., McInnes R., and Willard H. Genetic Variation in Individuals: Mutation and Polymorphism. Thompson & Thompson Genetics in Medicine. 6th ed. (2001), WB Saunders Company, Philadelphia
2. Van Deventer S. Cytokine and cytokine receptor polymorphisms in infectious disease. Intensive Care Med 26 (2000) S98-S102
3. Schork N.J., Fallin D., and Lanchbury J.S. Single nucleotide polymorphisms and the future of genetic epidemiology. Clin Genet 58 (2000) 250-264
4. Ng P.C., and Henikoff S. Accounting for human polymorphisms predicted to affect protein function. Genome Res 12 (2002) 436-446
5. Ramensky V., Bork P., and Sunyaev S. Human non-synonymous SNPs: server and survey. Nucleic Acids Res 30 (2002) 3894-3900
6. Riva A., and Kohane I.S. A SNP-centric database for the investigation of the human genome. BMC Bioinformatics 5 (2004) 33
7. Cargill M., Altshuler D., Ireland J., et al. Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat Genet 22 (1999) 231-238
8. Jin P., Panelli M.C., Marincola F.M., and Wang E. Cytokine polymorphism and its possible impact on cancer. Immunol Res 30 (2004) 181-190
9. Imahara S.D., and O'Keefe G.E. Genetic determinants of the inflammatory response. Curr Opin Crit Care 10 (2004) 318-324
10. Liangos O., Balakrishnan V.S., Pereira B.J., and Jaber B.L. Cytokine single nucleotide polymorphism. Role in acute renal failure. Contrib Nephrol 144 (2004) 63-75
11. Zhu Y., Spitz M.R., Amos C.I., Lin J., Schabath M.B., and Wu X. An evolutionary perspective on single-nucleotide polymorphism screening in molecular cancer epidemiology. Cancer Res 64 (2004) 2251-2257
12. Knight J.C., Keating B.J., Rockett K.A., and Kwiatkowski D.P. In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading. Nat Genet 33 (2003) 469-475
13. Joki-Erkkila V.P., Karjalainen J., Hulkkonen J., et al. Allergic rhinitis and polymorphisms of the interleukin 1 gene complex. Ann Allergy Asthma Immunol 91 (2003) 275-279
14. Adjers K., Pessi T., Karjalainen J., Huhtala H., and Hurme M. Epistatic effect of IL1A and IL4RA genes on the risk of atopy. J Allergy Clin Immunol 113 (2004) 445-447
15. Karjalainen J., Joki-Erkkila V.P., Hulkkonen J., et al. The IL1A genotype is associated with nasal polyposis in asthmatic adults. Allergy 58 (2003) 393-396
16. Walley A.J., Aucan C., Kwiatkowski D., and Hill A.V. Interleukin-1 gene cluster polymorphisms and susceptibility to clinical malaria in a Gambian case-control study. Eur J Hum Genet 12 (2004) 132-138
17. Lang N.P., Tonetti M.S., Suter J., Sorrell J., Duff G.W., and Kornman K.S. Effect of interleukin-1 gene polymorphisms on gingival inflammation assessed by bleeding on probing in a periodontal maintenance population. J Periodontal Res 35 (2000) 102-107
18. Kawaguchi Y., Tochimoto A., Ichikawa N., et al. Association of IL1A gene polymorphisms with susceptibility to and severity of systemic sclerosis in the Japanese population. Arthritis Rheum 48 (2003) 186-192
19. Papapanou P.N., Neiderud A.M., Sandros J., and Dahlen G. Interleukin-1 gene polymorphism and periodontal status. A case-control study. J Clin Periodontol 28 (2001) 389-396