메뉴 건너뛰기




Volumn 24, Issue 8, 2006, Pages 1946-1955

Selection of neural differentiation-specific genes by comparing profiles of random differentiation

Author keywords

Embryonic stem cells; Microarray; Neural differentiation; Random differentiation; Spearman's correlation

Indexed keywords

DNA METHYLTRANSFERASE;

EID: 33749186806     PISSN: 10665099     EISSN: None     Source Type: Journal    
DOI: 10.1634/stemcells.2005-0325     Document Type: Article
Times cited : (27)

References (44)
  • 1
    • 0032168636 scopus 로고    scopus 로고
    • Identifying the missing links: Genes that connect neural induction and primary neurogenesis in vertebrate embryos
    • Sasai Y. Identifying the missing links: Genes that connect neural induction and primary neurogenesis in vertebrate embryos. Neuron 1998;21:455-458.
    • (1998) Neuron , vol.21 , pp. 455-458
    • Sasai, Y.1
  • 2
    • 0035495992 scopus 로고    scopus 로고
    • Embryonic stem cell differentiation: The role of extracellular factors
    • Czyz J, Wobus A. Embryonic stem cell differentiation: The role of extracellular factors. Differentiation 2001;68:167-174.
    • (2001) Differentiation , vol.68 , pp. 167-174
    • Czyz, J.1    Wobus, A.2
  • 3
    • 0020326857 scopus 로고
    • Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells
    • Jones-Villeneuve EM, McBurney MW, Rogers KA et al. Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells. J Cell Biol 1982;94:253-262.
    • (1982) J Cell Biol , vol.94 , pp. 253-262
    • Jones-Villeneuve, E.M.1    McBurney, M.W.2    Rogers, K.A.3
  • 4
    • 0033638174 scopus 로고    scopus 로고
    • Induction of midbrain dopaminergic neurons from ES cells by stromal cell-derived inducing activity
    • Kawasaki H, Mizuseki K, Nishikawa S et al. Induction of midbrain dopaminergic neurons from ES cells by stromal cell-derived inducing activity. Neuron 2000;28:31-40.
    • (2000) Neuron , vol.28 , pp. 31-40
    • Kawasaki, H.1    Mizuseki, K.2    Nishikawa, S.3
  • 5
    • 0034044317 scopus 로고    scopus 로고
    • Efficient generation of midbrain and hindbrain neurons from mouse embryonic stem cells
    • Lee SH, Lumelsky N, Studer L et al. Efficient generation of midbrain and hindbrain neurons from mouse embryonic stem cells. Nat Biotechnol 2000;18:675-679.
    • (2000) Nat Biotechnol , vol.18 , pp. 675-679
    • Lee, S.H.1    Lumelsky, N.2    Studer, L.3
  • 6
    • 0032980340 scopus 로고    scopus 로고
    • Induction of a midbrain dopaminergic phenotype in Nurr1-overexpressing neural stem cells by type 1 astrocytes
    • Wagner J, Akerud P, Castro DS et al. Induction of a midbrain dopaminergic phenotype in Nurr1-overexpressing neural stem cells by type 1 astrocytes. Nat Biotechnol 1999;17:653-659.
    • (1999) Nat Biotechnol , vol.17 , pp. 653-659
    • Wagner, J.1    Akerud, P.2    Castro, D.S.3
  • 7
    • 13444256259 scopus 로고    scopus 로고
    • The homeodomain transcription factor Pitx3 facilitates differentiation of mouse embryonic stem cells into AHD2-expressing dopaminergic neurons
    • Chung S, Hedlund E, Hwang M et al. The homeodomain transcription factor Pitx3 facilitates differentiation of mouse embryonic stem cells into AHD2-expressing dopaminergic neurons. Mol Cell Neurosci 2005;28:241-252.
    • (2005) Mol Cell Neurosci , vol.28 , pp. 241-252
    • Chung, S.1    Hedlund, E.2    Hwang, M.3
  • 8
    • 8644259350 scopus 로고    scopus 로고
    • Dopaminergic differentiation of human embryonic stem cells
    • Zeng X, Cai J, Chen J et al. Dopaminergic differentiation of human embryonic stem cells. STEM CELLS 2004;22:925-940.
    • (2004) Stem Cells , vol.22 , pp. 925-940
    • Zeng, X.1    Cai, J.2    Chen, J.3
  • 9
    • 20044383922 scopus 로고    scopus 로고
    • In vitro and in vivo analyses of human embryonic stem cell-derived dopamine neurons
    • Park CH, Minn YK, Lee JY et al. In vitro and in vivo analyses of human embryonic stem cell-derived dopamine neurons. J Neurochem 2005;92:1265-1276.
    • (2005) J Neurochem , vol.92 , pp. 1265-1276
    • Park, C.H.1    Minn, Y.K.2    Lee, J.Y.3
  • 10
    • 0346022964 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of differentiation of embryonic stem cells into midbrain and hindbrain neurons
    • Ahn JI, Lee KH, Shin DM et al. Comprehensive transcriptome analysis of differentiation of embryonic stem cells into midbrain and hindbrain neurons. Dev Biol 2004;265:491-501.
    • (2004) Dev Biol , vol.265 , pp. 491-501
    • Ahn, J.I.1    Lee, K.H.2    Shin, D.M.3
  • 11
    • 0016489816 scopus 로고
    • Differentiation of clonal lines of teratocarcinoma cells: Formation of embryoid bodies in vitro
    • Martin GR, Evans MJ. Differentiation of clonal lines of teratocarcinoma cells: Formation of embryoid bodies in vitro. Proc Natl Acad Sci U S A 1975;72:1441-1445.
    • (1975) Proc Natl Acad Sci U S A , vol.72 , pp. 1441-1445
    • Martin, G.R.1    Evans, M.J.2
  • 12
    • 0033564776 scopus 로고    scopus 로고
    • Use of developmental marker genes to define temporal and spatial patterns of differentiation during EB formation
    • Leahy A, Xiong JW, Kuhnert F et al. Use of developmental marker genes to define temporal and spatial patterns of differentiation during EB formation. J Exp Zool 1999;284:67-81.
    • (1999) J Exp Zool , vol.284 , pp. 67-81
    • Leahy, A.1    Xiong, J.W.2    Kuhnert, F.3
  • 13
    • 0037028291 scopus 로고    scopus 로고
    • Identification of radiation-specific responses from gene expression profile
    • Park WY, Hwang CI, Im CN et al. Identification of radiation-specific responses from gene expression profile. Oncogene 2002;21:8521-8528.
    • (2002) Oncogene , vol.21 , pp. 8521-8528
    • Park, W.Y.1    Hwang, C.I.2    Im, C.N.3
  • 14
    • 23244454145 scopus 로고    scopus 로고
    • Gene expression profiling of anti-GBM glomerulonephritis model: The role of NF-kappaB in immune complex kidney disease
    • Kim JH, Ha IS, Hwang CI et al. Gene expression profiling of anti-GBM glomerulonephritis model: The role of NF-kappaB in immune complex kidney disease. Kidney Int 2004;66:1826-1837.
    • (2004) Kidney Int , vol.66 , pp. 1826-1837
    • Kim, J.H.1    Ha, I.S.2    Hwang, C.I.3
  • 15
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, Von Heydebreck A, Sultmann H et al. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002;18(suppl 1):S96-S104.
    • (2002) Bioinformatics , vol.18 , Issue.1 SUPPL.
    • Huber, W.1    Von Heydebreck, A.2    Sultmann, H.3
  • 16
    • 0034869983 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data
    • Technical Report presented at: January 20-26, San Jose, CA. Available at Accessed October 31, 2003
    • Yang YH, Dudoit S, Luu P et al. Normalization for cDNA microarray data. Technical Report presented at: SPIE BiOS 2001; January 20-26, 2001; San Jose, CA. Available at http://www.stat.berkeley.edu/users/terry/zarray/Html/normspie. html. Accessed October 31, 2003.
    • (2001) SPIE BiOS 2001
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3
  • 17
    • 0021907929 scopus 로고
    • Molecular cloning of gene sequences transcriptionally regulated by retinoic acid and dibutyryl cyclic AMP in cultured mouse teratocarcinoma cells
    • Wang SY, LaRosa GJ, Gudas LJ. Molecular cloning of gene sequences transcriptionally regulated by retinoic acid and dibutyryl cyclic AMP in cultured mouse teratocarcinoma cells. Dev Biol 1985;107:75-86.
    • (1985) Dev Biol , vol.107 , pp. 75-86
    • Wang, S.Y.1    LaRosa, G.J.2    Gudas, L.J.3
  • 18
    • 0033784152 scopus 로고    scopus 로고
    • Developmental regulation of neurogenesis in the pluripotent human embryonal carcinoma cell line NTERA-2
    • Przyborski SA, Morton IE, Wood A et al. Developmental regulation of neurogenesis in the pluripotent human embryonal carcinoma cell line NTERA-2. Eur J Neurosci 2000;12:3521-3528.
    • (2000) Eur J Neurosci , vol.12 , pp. 3521-3528
    • Przyborski, S.A.1    Morton, I.E.2    Wood, A.3
  • 19
    • 0025190642 scopus 로고
    • CNS stem cells express a new class of intermediate filament proteins
    • Lendahl U, Zimmerman LB, McKay RDG. CNS stem cells express a new class of intermediate filament proteins. Cell 1990;60:585-595.
    • (1990) Cell , vol.60 , pp. 585-595
    • Lendahl, U.1    Zimmerman, L.B.2    McKay, R.D.G.3
  • 20
    • 0029125995 scopus 로고
    • Pax-2 expression in the murine neural plate precedes and encompasses the expression domains of Wnt-1 and En-1
    • Rowitch DH, McMahon AP. Pax-2 expression in the murine neural plate precedes and encompasses the expression domains of Wnt-1 and En-1. Mech Dev 1995;52:3-8.
    • (1995) Mech Dev , vol.52 , pp. 3-8
    • Rowitch, D.H.1    McMahon, A.P.2
  • 21
    • 0032584085 scopus 로고    scopus 로고
    • Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons
    • Saucedo-Cardenas O, Quintana-Hau JD, Le WD et al. Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons. Proc Natl Acad Sci U S A 1998;95:4013-4018.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 4013-4018
    • Saucedo-Cardenas, O.1    Quintana-Hau, J.D.2    Le, W.D.3
  • 22
    • 28444477675 scopus 로고    scopus 로고
    • Analysis of Esg1 expression in pluripotent cells and the germline reveals similarities with Oct4 and Sox2 and differences between human pluripotent cell lines
    • Western PS, Maldonado-Saldivia J, van den Bergen J et al. Analysis of Esg1 expression in pluripotent cells and the germline reveals similarities with Oct4 and Sox2 and differences between human pluripotent cell lines. STEM CELLS 2005;23:1436-1442.
    • (2005) Stem Cells , vol.23 , pp. 1436-1442
    • Western, P.S.1    Maldonado-Saldivia, J.2    Van Den Bergen, J.3
  • 23
    • 2642551522 scopus 로고    scopus 로고
    • Structure and function of eukaryotic DNA methyltransferases
    • Chen T, Li E. Structure and function of eukaryotic DNA methyltransferases. Curr Top Dev Biol 2004;60:55-89.
    • (2004) Curr Top Dev Biol , vol.60 , pp. 55-89
    • Chen, T.1    Li, E.2
  • 24
    • 0014254846 scopus 로고
    • Probability plotting methods for the analysis of data
    • Wilk MB. Gnanadesikan. Probability plotting methods for the analysis of data. Biometrika 1968;55:1-17.
    • (1968) Biometrika , vol.55 , pp. 1-17
    • Wilk, M.B.1    Gnanadesikan2
  • 25
    • 3042552023 scopus 로고    scopus 로고
    • Controlling the number of false discoveries: Application to high-dimensional genomic data
    • Edward L Korn, James F et al. Controlling the number of false discoveries: Application to high-dimensional genomic data. J Stat Planning Inf 2004;124:379-398.
    • (2004) J Stat Planning Inf , vol.124 , pp. 379-398
    • Korn, E.L.1    James, F.2
  • 26
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • Wright GW, Simon R. A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 2003;19:2448-2455.
    • (2003) Bioinformatics , vol.19 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.2
  • 27
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. Gene Ontology: Tool for the unification of biology. Nat Genet 2000;25:25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
  • 28
    • 0033680486 scopus 로고    scopus 로고
    • Sox-4 messenger RNA is expressed in the embryonic growth plate and regulated via the parathyroid hormone/parathyroid hormone-related protein receptor in osteoblast-like cells
    • Reppe S, Rian E, Jemtland R et al. Sox-4 messenger RNA is expressed in the embryonic growth plate and regulated via the parathyroid hormone/parathyroid hormone-related protein receptor in osteoblast-like cells. J Bone Miner Res 2000;15:2402-2412.
    • (2000) J Bone Miner Res , vol.15 , pp. 2402-2412
    • Reppe, S.1    Rian, E.2    Jemtland, R.3
  • 29
    • 0022408894 scopus 로고
    • Identification of major cell classes in the developing mammalian nervous system
    • Hockfield S, McKay RDG. Identification of major cell classes in the developing mammalian nervous system. J Neurosci 1985;5:3310-3328.
    • (1985) J Neurosci , vol.5 , pp. 3310-3328
    • Hockfield, S.1    McKay, R.D.G.2
  • 30
    • 0028968802 scopus 로고
    • The neuron-restrictive silencer factor (NRSF): A coordinate repressor of multiple neuron-specific genes
    • Schoenherr CJ, Anderson DJ. The neuron-restrictive silencer factor (NRSF): A coordinate repressor of multiple neuron-specific genes. Science 1995;267:1360-1363.
    • (1995) Science , vol.267 , pp. 1360-1363
    • Schoenherr, C.J.1    Anderson, D.J.2
  • 31
    • 0031579665 scopus 로고    scopus 로고
    • Structure and expression of the mouse S10 gene
    • Zheng JY, Koda T, Arimura Y et al. Structure and expression of the mouse S10 gene. Biochim Biophys Acta 1997;1351:47-50.
    • (1997) Biochim Biophys Acta , vol.1351 , pp. 47-50
    • Zheng, J.Y.1    Koda, T.2    Arimura, Y.3
  • 32
    • 0030690117 scopus 로고    scopus 로고
    • Expression of neuroserpin, an inhibitor of tissue plasminogen activator, in the developing and adult nervous system of the mouse
    • Krueger SR, Ghisu GP, Cinelli P et al. Expression of neuroserpin, an inhibitor of tissue plasminogen activator, in the developing and adult nervous system of the mouse. J Neurosci 1997;17:8984-8996.
    • (1997) J Neurosci , vol.17 , pp. 8984-8996
    • Krueger, S.R.1    Ghisu, G.P.2    Cinelli, P.3
  • 33
    • 0034721938 scopus 로고    scopus 로고
    • The Rb-CDK4/6 signaling pathway is critical in neural precursor cell cycle regulation
    • Ferguson KL, Callaghan SM, O'Hare MJ et al. The Rb-CDK4/6 signaling pathway is critical in neural precursor cell cycle regulation. J Biol Chem 2000;275:33593-33600.
    • (2000) J Biol Chem , vol.275 , pp. 33593-33600
    • Ferguson, K.L.1    Callaghan, S.M.2    O'Hare, M.J.3
  • 34
    • 0029020757 scopus 로고
    • Cloning, baculovirus expression, and characterization of a second mouse prolyl 4-hydroxylase alphasubunit isoform: Formation of an alpha(2)beta(2) tetramer with the protein disulfide-isomerase/beta subunit
    • Helaakoski T, Annunen P, Vuori K et al. Cloning, baculovirus expression, and characterization of a second mouse prolyl 4-hydroxylase alphasubunit isoform: Formation of an alpha(2)beta(2) tetramer with the protein disulfide-isomerase/beta subunit. Proc Nat Acad Sci U S A 1995;92:4427-4431.
    • (1995) Proc Nat Acad Sci U S A , vol.92 , pp. 4427-4431
    • Helaakoski, T.1    Annunen, P.2    Vuori, K.3
  • 36
    • 0034687816 scopus 로고    scopus 로고
    • Deletion of tyrosine hydroxylase gene reveals functional interdependence of adrenocortical and chromaffin cell system in vivo
    • Bornstein SR, Tian H, Haidan A et al. Deletion of tyrosine hydroxylase gene reveals functional interdependence of adrenocortical and chromaffin cell system in vivo. Proc Natl Acad Sci U S A 2000;97:14742-14747.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 14742-14747
    • Bornstein, S.R.1    Tian, H.2    Haidan, A.3
  • 37
    • 0035152861 scopus 로고    scopus 로고
    • Clozapine increases apolipoprotein D expression in rodent brain: Towards a mechanism for neuroleptic pharmacotherapy
    • Thomas EA, Danielson PE, Nelson PA et al. Clozapine increases apolipoprotein D expression in rodent brain: Towards a mechanism for neuroleptic pharmacotherapy. J Neurochem 2001;76:789-796.
    • (2001) J Neurochem , vol.76 , pp. 789-796
    • Thomas, E.A.1    Danielson, P.E.2    Nelson, P.A.3
  • 38
    • 0041819572 scopus 로고    scopus 로고
    • Synthesis of glycosyl derivatives as dopamine prodrugs: Interaction with glucose carrier GLUT-1
    • Fernandez C, Nieto O, Fontenla JA et al. Synthesis of glycosyl derivatives as dopamine prodrugs: Interaction with glucose carrier GLUT-1. Org Biomol Chem 2003;1:767-771.
    • (2003) Org Biomol Chem , vol.1 , pp. 767-771
    • Fernandez, C.1    Nieto, O.2    Fontenla, J.A.3
  • 39
    • 0035886712 scopus 로고    scopus 로고
    • Tuning pacemaker frequency of individual dopaminergic neurons by Kv4.3L and KChip3.1 transcription
    • Liss B, Franz O, Sewing S et al. Tuning pacemaker frequency of individual dopaminergic neurons by Kv4.3L and KChip3.1 transcription. EMBO J 2001;20:5715-5724.
    • (2001) EMBO J , vol.20 , pp. 5715-5724
    • Liss, B.1    Franz, O.2    Sewing, S.3
  • 40
    • 0035853047 scopus 로고    scopus 로고
    • Most central nervous system D2 dopamine receptors are coupled to their effectors by Go
    • Jiang M, Spicher K, Boulay G et al. Most central nervous system D2 dopamine receptors are coupled to their effectors by Go. Proc Natl Acad Sci U S A 2001;98:3577-3582.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 3577-3582
    • Jiang, M.1    Spicher, K.2    Boulay, G.3
  • 42
    • 0141482021 scopus 로고    scopus 로고
    • + (KATP) channels by H2O2 underlies glutamate-dependent inhibition of striatal dopamine release
    • + (KATP) channels by H2O2 underlies glutamate-dependent inhibition of striatal dopamine release. Proc Natl Acad Sci U S A 2003;100:11729-11734.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 11729-11734
    • Avshalumov, M.V.1    Rice, M.E.2
  • 43
    • 0036459845 scopus 로고    scopus 로고
    • Identification and comparative analysis of differentially expressed proteins in rat striatum following 6-hydroxydopamine lesions of the nigrostriatal pathway: Up-regulation of amyloid precursor-like protein 2 expression
    • Shen Y, Yu Y, Guo H et al. Identification and comparative analysis of differentially expressed proteins in rat striatum following 6-hydroxydopamine lesions of the nigrostriatal pathway: Up-regulation of amyloid precursor-like protein 2 expression. Eur J Neurosci 2002;16:896-906.
    • (2002) Eur J Neurosci , vol.16 , pp. 896-906
    • Shen, Y.1    Yu, Y.2    Guo, H.3
  • 44
    • 0026068389 scopus 로고
    • Separation of periventricular dopaminergic and alpha-adrenergic systems from the vasopressin-secreting mechanisms activated by prostaglandin D2
    • Yamaguchi K, Hama H. Separation of periventricular dopaminergic and alpha-adrenergic systems from the vasopressin-secreting mechanisms activated by prostaglandin D2. Brain Res 1991;559:261-266.
    • (1991) Brain Res , vol.559 , pp. 261-266
    • Yamaguchi, K.1    Hama, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.