A branched-chain amino acid aminotransferase gene isolated from Hordeum vulgare is differentially regulated by drought stress

Theoretical and Applied Genetics

Volumn 113, Issue 6, 2006, Pages 965-976

  Malatrasi, M ^a,b   Corradi, M ^a   Svensson, J T ^b   Close, T J ^b   Gulli, M ^a   Marmiroli, N ^a  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID AMINOTRANSFERASE GENES; DROUGHT STRESS CONDITIONS; HORDEUM VULGARE; MITOCHONDRIAL TRANSIT PEPTIDES;

AMINO ACIDS; CELLS; CHROMOSOMES; DEGRADATION; DETOXIFICATION; DNA; POLYPEPTIDES; STRESS ANALYSIS;

GENES;

ABSCISIC ACID; AMINOTRANSFERASE; BRANCHED CHAIN AMINO ACID; MESSENGER RNA; PHYTOHORMONE; VEGETABLE PROTEIN; WATER;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; CHEMISTRY; CHROMOSOME MAP; DEHYDRATION; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT CHROMOSOME; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

ABSCISIC ACID; AMINO ACID SEQUENCE; AMINO ACIDS, BRANCHED-CHAIN; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CLONING, MOLECULAR; CONSERVED SEQUENCE; DEHYDRATION; GENE EXPRESSION REGULATION, PLANT; GENETIC COMPLEMENTATION TEST; HORDEUM; MOLECULAR SEQUENCE DATA; PLANT GROWTH REGULATORS; PLANT PROTEINS; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; TRANSAMINASES; WATER;

ARABIDOPSIS; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE; SACCHAROMYCES CEREVISIAE;

EID: 33749130205     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0339-6     Document Type: Article

References (43)

1. Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Arabidopsis AtMYC2 (HLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15:63-78
2. Altschul SF, Madden TL, Schäffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 2:3389-3402
3. Barr HD, Weatherley PE (1962) A re-examination of the relative turgidity technique for estimating water deficit in leaves. Aust J Biol Sci 1515:413-428
4. Bate N, Twell D (1998) Functional architecture of a late pollen promoter: pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements. Plant Mol Biol 37:859-869
5. Berger BJ, English S, Chan G, Knodel MH (2003) Methionine regeneration and aminotransferase in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis. J Bacteriol 185:2418-2431
6. Blum A (1996) Crop responses to drought and the interpretation of adaptation. Plant Growth Regul 20:135-148
7. Busk PK, Jensen AB, Pages M (1997) Regulatory elements in vivo in the promoter of the abscisic acid responsive gene rab17 from maize. Plant J 11:1285-1295
8. Campbell MA, Patel JK, Meyers JL, Myrick LC, Gustin JL (2001) Genes encoding for branched-chain amino acid aminotransferase are differentially expressed in plants. Plant Physiol Biochem 39:855-860
9. Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP (2004) A new resource for cereal genomics: 22 K barley GeneChip comes of age. Plant Physiol 134:960-968
10. Costa JM, Corey A, Hayes PM, Jobet C, Kleinhofs A, Kopisch-Obusch A, Kramer SF, Kudrna D, Li M, Riera-Lizarazu O, Sato K, Szucs P, Toojinda T, Vales MI, Wolfe RI (2001) Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population. Theor Appl Genet 103:415-424
11. Diebold R, Schuster J, Daschner K, Binder S (2002) The branched-chain amino acid transaminase gene family in Arabidopsis encodes plastid and mitochondrial proteins. Plant Physiol 129:540-550
12. Di Martino C, Delfine S, Pizzuto R, Loreto F, Fuggi A (2003) Free amino acids and glycine in leaf osmoregulation of spinach responding to increasing salt stress. New Phytol 158:455-463
13. Dunn MA, White AJ, Vural S, Hughes MA (1998) Identification of promoter elements in a low-temperature-responsive gene (blt4.9) from barley (Hordeum vulgare L.). Plant Mol Biol 38:551-564
14. Eden A, Benvenisty N (1999) Involvement of branched-chain amino acid aminotransferase (Bcat1/Eca39) in apoptosis. FEBS Lett 457:255-261
15. Fujiki Y, Sato T, Ito M, Watanabe A (2000) Isolation and chracterization of cDNA clones for E1β and E2 subunits of the branched-chain α-ketoacid deydrogense complex in Arabidopsis. J Biol Chem 275:6007-6013
16. Fujiki Y, Ito M, Itoh T, Nishida I, Watanabe A (2002) Activation of the promoters of Arabidopsis genes for the branched-chain a-keto acid dehydrogenase complex in transgenic tobacco BY-2 cells under sugar starvation. Plant Cell Physiol 43:275-280
17. Gerbling H, Gerhardt B (1989) Peroxisomal degradation of brached-chain 2-oxo-acids. Plant Physiol 91:1387-1392
18. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
19. Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database:1999. Nucleic Acids Res 27:297-300
20. Huang N, Sutliff TD, Litts JC, Rodriguez RL (1990) Classification and characterization of the rice alpha-amylase multigene family. Plant Mol Biol 14:655-668
21. Hwang YS, Karrer EE, Thomas BR, Chen L, Rodriguez RL (1998) Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation. Plant Mol Biol 36:331-341
22. Ito H, Fukuda Y, Murata K, Kimura A (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153:163-168
23. Kaplan F, Kopka J, Haskell DW, Zhao W, Schiller C, Gatzke N, Sung DY, Guy CL (2004) Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiol 136:4159-4168
24. Kispal G, Steiner H, Court DA, Rolinski B, Lill R (1996) Mitochondrial and cytosolic branched-chain amino acid transaminases from yeast, homologs of myc oncogene-regulated Eca39 protein. J Biol Chem 271:24458-24464
25. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172-175
26. Lafontaine D, Tollervey D (1996) One-step PCR mediated strategy for the construction of conditionally expressed and epitope tagged yeast proteins. Nucleic Acid Res 24:3469-3472
27. Lawlor DW, Cornic G (2002) Photosynthetic carbon assimilation and associated metabolism in relation to water deficit in higher plants. Plant Cell Environ 25:275-294
28. Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of polymerase chain reaction. Science 257:967-971
29. Malatrasi M, Close TJ, Marmiroli N (2002) Identification and mapping of a putative stress response regulator gene in barley. Plant Mol Biol 50:141-150
30. Manly K, Cudmore J, Meer J (2001) Map manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930-932
31. Reddy AR, Chaitanya KV, Vivekanandan M (2004) Drought-induced responses of photosynthesis and antioxidant metabolism in higher plants. J Plant Physiol 161:1189-1202
32. Rizhsky L, Liang H, Shuman J, Shulaev V, Davletova S, Mittler R (2004) When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 134:1683-1696
33. Rodriguez EM, Svensson JT, Malatrai M, Choi D-W, Close TJ (2005) Barley Dhn13 encodes a KS-type dehydrin with costitutive and stress responsive expression. Theor Appl Genet 110:852-858
34. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Plainview, NY
35. Schuster J, Binder S (2005) The mitochondrial branched-chain aminotransferase (AtBCAT-1) is capable to initiate degradation of leucine, isoleucine and valine in almost all tissue of Arabidopsis thaliana. Plant Mol Biol 57:241-254
36. Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. Plant J 33:259-270
37. Singh BK (1999) Biosynthesis of valine, leucine and isoleucine. In: Singh BK (ed) Plant amino acids: biochemistry and biotechnology. Marcel Dekker, New York, pp 227-247
38. Taylor NL, Heazlewood JL, Day DA, Millar AH (2004) Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis. Plant Physiol 134:838-848
39. Teulat B, Borries C, This D (2001) New QTLs identified for plant water status, water-soluble carbohydrate and osmotic adjustement in a barley population grown in a growth-chamber under two water regimes. Theor Appl Genet 103:161-170
40. Teulat B, Zoumarou-Wallis N, Rotter B, Ben Salem M, Bahri H, This D (2003) QTL for relative water content in field-grown barley and their stability across Mediterranean environments. Theor Appl Genet 108:181-188
41. Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K (1993) An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell 5:1529-1539
42. Verwoerd TC, Dekker BMM, Hoekema A (1989) A small scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Res 17:2362
43. Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA (2000) A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theor Appl Genet 101:1093-1099