Molecular variability of the coat protein gene of potato virus Y from tobacco in China

Acta Virologica

Volumn 50, Issue 2, 2006, Pages 107-113

  Li, N ^a,b   Wang, X ^a   Zhou, G ^a   Dong, J ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b AGRICULTURAL UNIVERSITY OF HEBEI   (China)

Author keywords

Chinese isolates; Coat protein; Multiple sequence alignment; Nucleotide sequencing; Phylogenetic tree; Potato virus Y; Tobacco

Indexed keywords

COAT PROTEIN; CAPSID PROTEIN; VIRUS ANTIGEN;

AMINO ACID SEQUENCE; ARTICLE; CHINA; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; GEOGRAPHIC DISTRIBUTION; GREENHOUSE; MOSAICISM; NECROSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; POTYVIRUS; TOBACCO; VIRUS IDENTIFICATION; VIRUS INFECTION; VIRUS STRAIN; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PLANT DISEASE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; VIROLOGY;

NICOTIANA TABACUM; POTATO VIRUS Y;

AMINO ACID SEQUENCE; ANTIGENS, VIRAL; CAPSID PROTEINS; CHINA; ENZYME-LINKED IMMUNOSORBENT ASSAY; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; POLYMORPHISM, GENETIC; POTYVIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; TOBACCO;

EID: 33749059630     PISSN: 0001723X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Aleman-Verdaguer ME, Goudou-Urbino C, Dubern J (1997): Analysis of the sequence diversity of the P1, HC, P3, NIb and CP genomic regions of several yam mosaic potyvirus isolates. J. Gen. Virol. 78, 1253-1264.
2. C strains using RT-PCR. J. Gen. Virol. 102, 103-112.
3. Blanco-Urgoiti B, Sanchez F, Dopazo J (1996): A strain-type clustering of potatovirus Y based on the genetic distance between isolates calculated by RFLP analysis of the amplified coat protein gene. Arch. Virol. 141, 2425-2442.
4. Čeřovská N, Moravec T, Filigarová M (2001): Nucleotide sequences of 5′-terminal parts of coat protein genes of various isolates of NTN strain of potato virus Y. Acta Virol. 45, 55-59.
5. Chachulska AM, Chrzanowska M, Robadlia C (1997): Tobacco veinal necrosis determinants are unlikely to be located within the 5′ and 3′-terminal sequences of the potato virus Y genome. Arch. Virol. 142, 765-779.
6. Domingo E, Holland JJ (1997): RNA virus mutations and fitness for survival. Annu. Rev. Micorbiol. 51, 151-178.
7. Du G, Wang X, Zhou G (2004): Digoxigenin-labelled cDNA probes for the detection of Tobacco mosaic virus, Cucumber mosaic virus and Potato virus Y. Acta Phytopatohol. Sinica. 34, 75-79.
8. N isolates by PCR-RFLP. Eur. J. Plant Pathol. 102, 655-662.
9. N isolates. Arch. Virol. 147, 363-378.
10. Glais L, Tribodet M, Gauthier JP (1998): RFLP mapping of the whole genome of ten viral isolates representative of different biological groups of potato virus Y. Arch. Virol. 143, 2077-2091.
11. Handley JA, Smith GR, Dalel JL (1998): Harding1 Sequence diversity in the coat protein coding region of twelve sugarcane mosaic potyvirus isolates from Australia, USA and South Africa. Arch. Virol. 143, 1145-1153.
12. Kerlan C, Tribodet M, Glais L (1999): Variability of potato virus Y in potato crops in France. Phytopathology 147, 643-651.
13. Le Romancer M, Kerlan C, Nedellec M (1994): Biological characterization of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol. 43, 138-144.
14. Lin HX, Rubio L, Smythe A (2003): Genetic diversity and biological variation among California isolates of Cucumber mosaic virus. J. Gen. Virol. 84, 249-258.
15. Marie-Jeanne Tordo V, Chachulska A M, Fakhfakh H, Le Romancer M, Robaglia C, Astier-Manifacier S (1995): Sequence polymorphism in the 5′NTR and P1 coding region of genomic RNA. J. Virol. Methods 76, 939-949.
16. NTN. J. Virol. Methods 103, 145-156.
17. Nie XZ, Singh RP (2002b): A new approach for the simultaneous differentiation of biological and geographical strains of potato virus Y by uniplex and multiplex RT-PCR. J. Virol. Methods 104, 40-54.
18. NTN isolates by multiplex RT-PCR. J. Virol. Methods 113, 69-77.
19. Piche LM, Singh RP, Nie X, Gudmestad NC (2004) Diversity among PVY field isolates obtained from potatoes grown in the United States. Phytopathology 94, 1368-1375.
20. Riechmann JL, Lain S (1992): Highlights and prospects of potyvirus molecular biology. J. Gen. Virol. 73, 1-16.
21. Roossinck MJ (1997): Mechanisms of plant virus evolution. Annu. Rev. Phytopathol. 35, 1953-1965.
22. Rubio L, Soong J, Kao J (1999): Geographic distribution and molecular variation of isolates of three whitefly-borne closteroviruses of cucurbits. Phytopathology 89, 707-711.
23. Rubio L, Abou-Jawdah Y, Lin HX (2001): Geographically distant isolates of the Crinivirus cucurbit yellow stunting disorder virus show very low genetic diversity in the coat protein gene. J. Gen. Virol. 82, 929-933.
24. Shukla DD, McKern NM, Ward CW (1988a): Coat proteins of potyviruses 5. Symptomatology, serology and coat protein sequences of three strains of passionfruit woodiness virus. Arch. Virol. 102, 221-232.
25. Shukla DD, Thomas JE, Mckern NM, Tracy SL (1998): Coat protein of Potyviruses 4. Comparison of biological properties, serological relationships and coat protein amino acid sequences of four strains of potato virus Y. Arch. Virol. 102, 207-219.
26. Shukla DD, Ward CW (1988b): Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J. Gen. Virol. 69, 2703-2710.
27. Shukla DD, Ward CW (1989): Identification and classification of potyvirus on the basis of coat protein sequence data and serology. Arch. Virol. 106, 171-200.
28. Shukla DD, Ward CW, Brunt AA (1994): The Potyviridae Wallingford. CAB International.
29. Sudarsono, Woloshuk SL, Xiong Z (1993): Nucleotide sequence of the capsid protein cistrons from six potato virus Y (PVY) isolates infecting tobacco. Arch. Virol. 132, 161-170.
30. Tordo VM, Chachulska AM, Fakhfakh H (1995): Sequence polymorphism in the 5′NTR and in the P1 coding region of potato virus Y genomic RNA. J. Gen. Virol. 76, 939-49.
31. Van der Vlugt RAA, Leunissen J, Goldbach R (1993): Taxonomic relationships between distinct potato irus Y isolates based on detailed comparisons of the viral coat proteins and 3′-nontranslated regions. Arch. Virol. 131, 361-375.