메뉴 건너뛰기




Volumn 141, Issue 12, 1996, Pages 2425-2442

A strain-type clustering of potato virus Y based on the genetic distance between isolates calculated by RFLP analysis of the amplified coat protein gene

Author keywords

[No Author keywords available]

Indexed keywords


EID: 0030469315     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF01718641     Document Type: Article
Times cited : (36)

References (60)
  • 1
    • 0027197652 scopus 로고
    • Genetic variability and evolution of the satellite RNA of cucumber mosaic virus during natural epidemics
    • Aranda MA, Fraile A, García Arenal F (1993) Genetic variability and evolution of the satellite RNA of cucumber mosaic virus during natural epidemics. J Virol 67: 5 896-5 901
    • (1993) J Virol , vol.67 , pp. 5896-5901
    • Aranda, M.A.1    Fraile, A.2    García Arenal, F.3
  • 2
    • 0025954581 scopus 로고
    • The natural genomic variability of poliovirus analyzed by a restriction fragment length polymorphism assay
    • Balanant J, Guillot S, Candrea A, Delpeyroux F, Crainic R (1991) The natural genomic variability of poliovirus analyzed by a restriction fragment length polymorphism assay. Virology 184: 645-654
    • (1991) Virology , vol.184 , pp. 645-654
    • Balanant, J.1    Guillot, S.2    Candrea, A.3    Delpeyroux, F.4    Crainic, R.5
  • 3
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates
    • Barnes WM (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci USA 91: 2 216-2 220
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 4
    • 0024309795 scopus 로고
    • Nucleotide cDNA sequence coding for the PVYO coat protein
    • Bravo-Almonacid F, Mentaberry AN (1989) Nucleotide cDNA sequence coding for the PVYO coat protein. Nucleic Acids Res 17: 4 401
    • (1989) Nucleic Acids Res , vol.17 , pp. 4401
    • Bravo-Almonacid, F.1    Mentaberry, A.N.2
  • 5
    • 84970062288 scopus 로고
    • Genetical studies on resistance to potato viruses X and Y
    • Cockerham (1970) Genetical studies on resistance to potato viruses X and Y. Heredity 25: 309-348
    • (1970) Heredity , vol.25 , pp. 309-348
    • Cockerham1
  • 6
    • 0028261194 scopus 로고
    • Effective amplification of long targets from cloned inserts and human genomic DNA
    • Cheng S, Fockler C, Barnes WM, Higuchi R (1994) Effective amplification of long targets from cloned inserts and human genomic DNA. Proc Natl Acad Sci USA 91: 5 695-5 699
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5695-5699
    • Cheng, S.1    Fockler, C.2    Barnes, W.M.3    Higuchi, R.4
  • 9
    • 0028073302 scopus 로고
    • Molecular cloning and sequencing of the capsid and the nuclear inclusion protein genes of a North American PVYN isolate
    • Dhar AK, Singh RP, Boucher A (1994) Molecular cloning and sequencing of the capsid and the nuclear inclusion protein genes of a North American PVYN isolate. Can J Microbiol 40: 798-804
    • (1994) Can J Microbiol , vol.40 , pp. 798-804
    • Dhar, A.K.1    Singh, R.P.2    Boucher, A.3
  • 10
    • 0028258693 scopus 로고
    • Estimating errors and confidence intervals from branch lengths in phylogenetic trees by a bookstrap approach
    • Dopazo J (1994) Estimating errors and confidence intervals from branch lengths in phylogenetic trees by a bookstrap approach. J Mol Evol 38: 300-304
    • (1994) J Mol Evol , vol.38 , pp. 300-304
    • Dopazo, J.1
  • 11
    • 0027489380 scopus 로고
    • Estimates by computer simulation of genetic distances from comparisons of RNAse-A mismatch cleavage patterns
    • Dopazo J, Sobrino F, López Galíndez C (1993) Estimates by computer simulation of genetic distances from comparisons of RNAse-A mismatch cleavage patterns. J Virol Methods 45: 73-82
    • (1993) J Virol Methods , vol.45 , pp. 73-82
    • Dopazo, J.1    Sobrino, F.2    López Galíndez, C.3
  • 12
    • 0022392811 scopus 로고
    • Nucleotide sequence at the 3′ terminus of pepper mottle virus genomic RNA: Evidence for an alternative mode of potyvirus capsid protein gene organization
    • Dougherty WG, Allison RF, Parks TD, Johnston RE, Fields MJ, Armstrong FB (1985) Nucleotide sequence at the 3′ terminus of pepper mottle virus genomic RNA: evidence for an alternative mode of potyvirus capsid protein gene organization. Virology 146: 282-291
    • (1985) Virology , vol.146 , pp. 282-291
    • Dougherty, W.G.1    Allison, R.F.2    Parks, T.D.3    Johnston, R.E.4    Fields, M.J.5    Armstrong, F.B.6
  • 14
    • 0000982224 scopus 로고
    • Variabilité naturelle des souches du virus Y de la pomme de terre dans les cultures de piment du sud-est de la France. Caractérisation et classification en pathotypes
    • Gebre Selassie K, Marchoux G, Delecolle B, Pochard E (1985) Variabilité naturelle des souches du virus Y de la pomme de terre dans les cultures de piment du sud-est de la France. Caractérisation et classification en pathotypes. Agronomie 5: 621-630
    • (1985) Agronomie , vol.5 , pp. 621-630
    • Gebre Selassie, K.1    Marchoux, G.2    Delecolle, B.3    Pochard, E.4
  • 15
    • 0027358346 scopus 로고
    • Characterisation of isolates and strains of citrus-tristeza-closterovirus using restriction analysis of the coat protein gene amplified by the polymerase chain reaction
    • Gillings M, Broadbent P, Indsto J, Lee R (1993) Characterisation of isolates and strains of citrus-tristeza-closterovirus using restriction analysis of the coat protein gene amplified by the polymerase chain reaction. J Virol Methods 44: 305-317
    • (1993) J Virol Methods , vol.44 , pp. 305-317
    • Gillings, M.1    Broadbent, P.2    Indsto, J.3    Lee, R.4
  • 16
    • 0002482842 scopus 로고
    • Relationship between strains of potato virus Y and breeding for resistance, cross protection, and interference
    • Gooding GV (1985) Relationship between strains of potato virus Y and breeding for resistance, cross protection, and interference. Tobacco Sci 29: 99-104
    • (1985) Tobacco Sci , vol.29 , pp. 99-104
    • Gooding, G.V.1
  • 17
    • 0000387059 scopus 로고
    • Strains of potato virus Y affecting flue-cured tobacco in the South Eastern United States
    • Gooding GV, Tolin SA (1973) Strains of potato virus Y affecting flue-cured tobacco in the South Eastern United States. Plant Dis Rep 57: 200-204
    • (1973) Plant Dis Rep , vol.57 , pp. 200-204
    • Gooding, G.V.1    Tolin, S.A.2
  • 18
    • 0001548718 scopus 로고
    • Characterization of monoclonal antibodies to potato virus Y and their use for virus detection
    • Gugerli P, Fries P (1973) Characterization of monoclonal antibodies to potato virus Y and their use for virus detection. J Gen Virol 64: 2 471-2 477
    • (1973) J Gen Virol , vol.64 , pp. 2471-2477
    • Gugerli, P.1    Fries, P.2
  • 19
    • 0028285665 scopus 로고
    • Characterization and strain identification of a potato virus Y isolate non-reactive with monoclonal antibodies specific to the ordinary and necrotic strains
    • Hataya T, Inoue AK, Ohsima K, Shikata E (1994) Characterization and strain identification of a potato virus Y isolate non-reactive with monoclonal antibodies specific to the ordinary and necrotic strains. Intervirology 37: 12-19
    • (1994) Intervirology , vol.37 , pp. 12-19
    • Hataya, T.1    Inoue, A.K.2    Ohsima, K.3    Shikata, E.4
  • 20
    • 0025661868 scopus 로고
    • Polymerase chain-reaction-mediated cloning and expression of the coat protein gene of potato virus Y in Escherichia coli
    • Hataya T, Sano T, Oshima K, Shikata E (1990) Polymerase chain-reaction-mediated cloning and expression of the coat protein gene of potato virus Y in Escherichia coli. Virus Genes 4: 339-350
    • (1990) Virus Genes , vol.4 , pp. 339-350
    • Hataya, T.1    Sano, T.2    Oshima, K.3    Shikata, E.4
  • 21
    • 0024395768 scopus 로고
    • Nucleotide sequence of the coat protein gene of a necrotic strain of potato virus Y from New Zealand
    • Hay JM, Fellowes AP, Timmerman GM (1989) Nucleotide sequence of the coat protein gene of a necrotic strain of potato virus Y from New Zealand. Arch Virol 107: 111-122
    • (1989) Arch Virol , vol.107 , pp. 111-122
    • Hay, J.M.1    Fellowes, A.P.2    Timmerman, G.M.3
  • 22
    • 0026645527 scopus 로고
    • Cloning and sequencing of the 3′ half of a potato virus Y (O-strain) genome encoding the 5K protein, protease, polymerase, and coat protein
    • Hidaka M, Yoshida Y, Masaki H, Namba S, Yamashita S, Tsuchizaki T, Uozumi T (1992) Cloning and sequencing of the 3′ half of a potato virus Y (O-strain) genome encoding the 5K protein, protease, polymerase, and coat protein. Nucleic Acids Res 20: 3 515
    • (1992) Nucleic Acids Res , vol.20 , pp. 3515
    • Hidaka, M.1    Yoshida, Y.2    Masaki, H.3    Namba, S.4    Yamashita, S.5    Tsuchizaki, T.6    Uozumi, T.7
  • 23
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munroe HL (ed) Academic Press, New York
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules In: Munroe HL (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 24
    • 0028294049 scopus 로고
    • MEGA: Molecular evolutionary genetics analysis software for microcomputers
    • Kumar S, Tamura K, Nei M (1994) MEGA: Molecular evolutionary genetics analysis software for microcomputers. Comput Appl Biosci 10: 189-191
    • (1994) Comput Appl Biosci , vol.10 , pp. 189-191
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 25
    • 0025096937 scopus 로고
    • Engineering resistance to mixed virus infection in a commercial potato cultivar: Resistance to potato virus X and potato virus Y in transgenic Russet Burbank
    • Lawson G, Kaniewski W, Haley L, Rozman R, Newell C, Sanders P, Tumer NE (1990) Engineering resistance to mixed virus infection in a commercial potato cultivar: resistance to potato virus X and potato virus Y in transgenic Russet Burbank. Biotechnology 8: 127-134
    • (1990) Biotechnology , vol.8 , pp. 127-134
    • Lawson, G.1    Kaniewski, W.2    Haley, L.3    Rozman, R.4    Newell, C.5    Sanders, P.6    Tumer, N.E.7
  • 27
    • 0027142793 scopus 로고
    • Nuclear RFLP between pepper cultivars (Capsicum annum L.)
    • Lefevbre V, Palloix, Rives M (1993) Nuclear RFLP between pepper cultivars (Capsicum annum L.). Euphytica 71: 189-199
    • (1993) Euphytica , vol.71 , pp. 189-199
    • Lefevbre, V.1    Palloix2    Rives, M.3
  • 28
    • 0024690185 scopus 로고
    • A statistical test of phylogenies estimated from sequence data
    • Li WH (1989) A statistical test of phylogenies estimated from sequence data. Mol Biol Evol 6: 424-435
    • (1989) Mol Biol Evol , vol.6 , pp. 424-435
    • Li, W.H.1
  • 29
    • 0028146392 scopus 로고
    • Detection of genetic variations in serotype I isolates of infectious bursal disease virus using polymerase chain reaction and restriction endonuclease analysis
    • Liu HJ, Giambrone JJ, Dormitorio T (1994) Detection of genetic variations in serotype I isolates of infectious bursal disease virus using polymerase chain reaction and restriction endonuclease analysis. J Virol Methods 48: 281-291
    • (1994) J Virol Methods , vol.48 , pp. 281-291
    • Liu, H.J.1    Giambrone, J.J.2    Dormitorio, T.3
  • 31
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M, Li W (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5 269-5 273
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.2
  • 32
    • 0025288969 scopus 로고
    • A simple method for estimatting average number of nucleotide substitutions within and between populations from restriction data
    • Nei M, Miller JC (1990) A simple method for estimatting average number of nucleotide substitutions within and between populations from restriction data. Genetics 125: 873-879
    • (1990) Genetics , vol.125 , pp. 873-879
    • Nei, M.1    Miller, J.C.2
  • 33
    • 0027420976 scopus 로고
    • A method combining immunocapture and PCR amplification in a microtiter plate for the detection of plant viruses and subviral pathogens
    • Nolasco G, De Blas C, Torres V, Ponz F (1993) A method combining immunocapture and PCR amplification in a microtiter plate for the detection of plant viruses and subviral pathogens. J Virol Methods 45: 201-218
    • (1993) J Virol Methods , vol.45 , pp. 201-218
    • Nolasco, G.1    De Blas, C.2    Torres, V.3    Ponz, F.4
  • 34
    • 0007790461 scopus 로고
    • Comparison of biological properties, serological characteristic and amino acid sequences of coat protein between potato virus Y ordinary strain and necrotic strain
    • Oshima K, Hataya T, Sano T, Inoue AK, Shikata E (1991) Comparison of biological properties, serological characteristic and amino acid sequences of coat protein between potato virus Y ordinary strain and necrotic strain. Ann Phytopathol Soc Japan 47: 615-622
    • (1991) Ann Phytopathol Soc Japan , vol.47 , pp. 615-622
    • Oshima, K.1    Hataya, T.2    Sano, T.3    Inoue, A.K.4    Shikata, E.5
  • 36
    • 0025185351 scopus 로고
    • Cloning and sequencing of the 3′ -terminal region of potato virus YN (Russian isolate) RNA genome
    • Puurand Ü, Saarma M (1990) Cloning and sequencing of the 3′ -terminal region of potato virus YN (Russian isolate) RNA genome. Nucleic Acids Res 18: 6 694
    • (1990) Nucleic Acids Res , vol.18 , pp. 6694
    • Puurand, Ü.1    Saarma, M.2
  • 37
    • 0026573174 scopus 로고
    • Highlights and prospects of potyvirus molecular biology
    • Riechmann JL, Laín S, García JA (1992) Highlights and prospects of potyvirus molecular biology. J Gen Virol 73: 1-16
    • (1992) J Gen Virol , vol.73 , pp. 1-16
    • Riechmann, J.L.1    Laín, S.2    García, J.A.3
  • 39
    • 0024031195 scopus 로고
    • Nucleotide sequence of the capsid protein gene of potato virus Y (PVY)
    • Rosner A, Raccah B (1988) Nucleotide sequence of the capsid protein gene of potato virus Y (PVY). Virus Genes 1: 255-260
    • (1988) Virus Genes , vol.1 , pp. 255-260
    • Rosner, A.1    Raccah, B.2
  • 40
    • 0343221185 scopus 로고
    • Coat protein phylogeny and systematics of potyviruses
    • Barnett OW (ed) Springer, Wien, New York, Arch Virol [Suppl] 5
    • Rybicki EP, Shukla DD (1992) Coat protein phylogeny and systematics of potyviruses. In: Barnett OW (ed) Potyvirus taxonomy. Springer, Wien, New York, pp 377-385 (Arch Virol [Suppl] 5)
    • (1992) Potyvirus Taxonomy , pp. 377-385
    • Rybicki, E.P.1    Shukla, D.D.2
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: New method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 42
    • 0028097709 scopus 로고
    • Evolutionary relationships among bean common mosaic virus strains and closely related potyviruses
    • Saíz M, Dopazo J, Castro S, Romero J (1994) Evolutionary relationships among bean common mosaic virus strains and closely related potyviruses. Virus Res 31: 39-48
    • (1994) Virus Res , vol.31 , pp. 39-48
    • Saíz, M.1    Dopazo, J.2    Castro, S.3    Romero, J.4
  • 44
    • 51249173037 scopus 로고
    • Preparation of additional monoclonal antibodies for detection and discrimination of potato virus Y isolates infecting potato
    • Sanz A, Cambra M, Pérez de San Román C, Miguet JG, Cortes E, Gorris MT, Vela C (1990) Preparation of additional monoclonal antibodies for detection and discrimination of potato virus Y isolates infecting potato. Potato Res 33: 365-375
    • (1990) Potato Res , vol.33 , pp. 365-375
    • Sanz, A.1    Cambra, M.2    Pérez De San Román, C.3    Miguet, J.G.4    Cortes, E.5    Gorris, M.T.6    Vela, C.7
  • 45
    • 0028039318 scopus 로고
    • Differentiation of vaccine and wild-type polioviruses using polymerase chain reaction and restriction enzyme analysis
    • Schweiger B, Schreier E, Bothing B, Lopezpila JM (1994) Differentiation of vaccine and wild-type polioviruses using polymerase chain reaction and restriction enzyme analysis. Arch Virol 134: 39-50
    • (1994) Arch Virol , vol.134 , pp. 39-50
    • Schweiger, B.1    Schreier, E.2    Bothing, B.3    Lopezpila, J.M.4
  • 46
    • 0000931377 scopus 로고
    • Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group
    • Shukla DD, Ward CW (1988) Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J Gen Virol 69: 2 703-2 710
    • (1988) J Gen Virol , vol.69 , pp. 2703-2710
    • Shukla, D.D.1    Ward, C.W.2
  • 48
    • 0027357701 scopus 로고
    • RNA hybrid mismatch polymorphisms in Australian populations of turnip yellow mosaic tymovirus
    • Skotnicki ML, Mackenzie AM, Ding SW, Mo JQ, Gibbs AJ (1993) RNA hybrid mismatch polymorphisms in Australian populations of turnip yellow mosaic tymovirus. Arch Virol 132: 83-99
    • (1993) Arch Virol , vol.132 , pp. 83-99
    • Skotnicki, M.L.1    Mackenzie, A.M.2    Ding, S.W.3    Mo, J.Q.4    Gibbs, A.J.5
  • 49
    • 0028003238 scopus 로고
    • Limited degree of serological variability in pepper strains of potato virus Y as revealed by analysis with monoclonal antibodies
    • Soto MJ, Luis Arteaga M, Fereres A, Ponz F (1994) Limited degree of serological variability in pepper strains of potato virus Y as revealed by analysis with monoclonal antibodies. Ann Appl Biol 124: 37-43
    • (1994) Ann Appl Biol , vol.124 , pp. 37-43
    • Soto, M.J.1    Luis Arteaga, M.2    Fereres, A.3    Ponz, F.4
  • 51
    • 0028181842 scopus 로고
    • Rapid detection and differentiation of tobamoviruses infecting L-resistant genotypes of pepper by RT-PCR and restriction analysis
    • Tenllado F, García Luque I, Serra MT, Díaz Ruiz JR (1994) Rapid detection and differentiation of tobamoviruses infecting L-resistant genotypes of pepper by RT-PCR and restriction analysis. J Virol Methods 47: 165-173
    • (1994) J Virol Methods , vol.47 , pp. 165-173
    • Tenllado, F.1    García Luque, I.2    Serra, M.T.3    Díaz Ruiz, J.R.4
  • 52
    • 0027393909 scopus 로고
    • Cloning and sequencing of potato virus Y (hungarian isolate) genomic RNA
    • Thole V, Dalmay T, Burgyán J, Balázs E (1993) Cloning and sequencing of potato virus Y (hungarian isolate) genomic RNA. Gene 123: 149-156
    • (1993) Gene , vol.123 , pp. 149-156
    • Thole, V.1    Dalmay, T.2    Burgyán, J.3    Balázs, E.4
  • 56
    • 0027353680 scopus 로고
    • Taxonomic relationships between distinct potato virus-Y isolates based on detailed comparisons of the viral coat proteins and 3′-nontranslated regions
    • van der Vlugt RAA, Leunissen J, Goldbach R (1993) Taxonomic relationships between distinct potato virus-Y isolates based on detailed comparisons of the viral coat proteins and 3′-nontranslated regions. Arch Virol 131: 361-375
    • (1993) Arch Virol , vol.131 , pp. 361-375
    • Van Der Vlugt, R.A.A.1    Leunissen, J.2    Goldbach, R.3
  • 57
    • 0028123134 scopus 로고
    • A PCR-restriction enzyme technique for determining dengue virus subgroups within serotypes
    • Vorndam V, Kuno G, Rosado N (1994) A PCR-restriction enzyme technique for determining dengue virus subgroups within serotypes. J Virol Methods 48: 237-244
    • (1994) J Virol Methods , vol.48 , pp. 237-244
    • Vorndam, V.1    Kuno, G.2    Rosado, N.3
  • 59
    • 0024389034 scopus 로고
    • Cloning of the potato virus Y genes encoding the capsid protein gene CP and the nuclear inclusion protein NIb
    • Wefels E, Sommer H, Salamini F, Rohde W (1989) Cloning of the potato virus Y genes encoding the capsid protein gene CP and the nuclear inclusion protein NIb. Arch Virol 107: 123-134
    • (1989) Arch Virol , vol.107 , pp. 123-134
    • Wefels, E.1    Sommer, H.2    Salamini, F.3    Rohde, W.4
  • 60
    • 0025185916 scopus 로고
    • cDNA sequence of the 3′-coding region of PVY genome (the Chinese isolate)
    • Zhou X-R, Fang R-X, Chen Z-X, Mang K-Q (1990) cDNA sequence of the 3′-coding region of PVY genome (the Chinese isolate). Nucleic Acids Res 18: 5 554
    • (1990) Nucleic Acids Res , vol.18 , pp. 5554
    • Zhou, X.-R.1    Fang, R.-X.2    Chen, Z.-X.3    Mang, K.-Q.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.