메뉴 건너뛰기




Volumn 2006, Issue , 2006, Pages 1-7

Structural analysis of single-point mutations given an RNA sequence: A case study with RNAMute

Author keywords

[No Author keywords available]

Indexed keywords

POINT MUTATIONS; RNA SEQUENCE; RNA TRANSCRIPT; SPECTINOMYCIN;

EID: 33749023426     PISSN: 11108657     EISSN: 16870433     Source Type: Journal    
DOI: 10.1155/ASP/2006/56246     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 0018254569 scopus 로고
    • RNA secondary structure: A complete mathematical analysis
    • M. S. Waterman T. F. Smith RNA secondary structure: a complete mathematical analysis. Mathematical Biosciences 42 1978 3-4 257 266
    • (1978) Mathematical Biosciences , vol.42 , Issue.3-4 , pp. 257-266
    • Waterman, M.S.1    Smith, T.F.2
  • 2
    • 0034070995 scopus 로고    scopus 로고
    • Calculating nucleic acid secondary structure
    • M. Zuker Calculating nucleic acid secondary structure. Current Opinion in Structural Biology 10 2000 3 303 310
    • (2000) Current Opinion in Structural Biology , vol.10 , Issue.3 , pp. 303-310
    • Zuker, M.1
  • 3
    • 0019082587 scopus 로고
    • Fast algorithm for predicting the secondary structure of single-stranded RNA
    • R. Nussinov A. B. Jacobson Fast algorithm for predicting the secondary structure of single-stranded RNA. Proceedings of the National Academy of Sciences 77 1980 11 6309 6313
    • (1980) Proceedings of the National Academy of Sciences , vol.77 , Issue.11 , pp. 6309-6313
    • Nussinov, R.1    Jacobson, A.B.2
  • 4
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • M. Zuker P. Stiegler Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research 9 1981 1 133 148
    • (1981) Nucleic Acids Research , vol.9 , Issue.1 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 5
    • 0000616205 scopus 로고
    • RNA secondary structures and their prediction
    • M. Zuker D. Sankoff RNA secondary structures and their prediction. Bulletin of Mathematical Biology 46 1984 4 591 621
    • (1984) Bulletin of Mathematical Biology , vol.46 , Issue.4 , pp. 591-621
    • Zuker, M.1    Sankoff, D.2
  • 6
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • M. Zuker Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31 2003 13 3406 3415
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 7
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • I. L. Hofacker Vienna RNA secondary structure server. Nucleic Acids Research 31 2003 13 3429 3431
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 8
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • D. H. Mathews J. Sabina M. Zuker D. H. Turner Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology 288 1999 5 911 940
    • (1999) Journal of Molecular Biology , vol.288 , Issue.5 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 10
    • 0037115905 scopus 로고    scopus 로고
    • In vivo selection of spectinomycin-binding RNAs
    • J. M. Zimmerman L. J. Maher III In vivo selection of spectinomycin- binding RNAs. Nucleic Acids Research 30 2002 24 5425 5435
    • (2002) Nucleic Acids Research , vol.30 , Issue.24 , pp. 5425-5435
    • Zimmerman, J.M.1    Maher Iii, L.J.2
  • 13
    • 4444311170 scopus 로고    scopus 로고
    • Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation
    • D. Barash Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation. Bioinformatics 20 2004 12 1861 1869
    • (2004) Bioinformatics , vol.20 , Issue.12 , pp. 1861-1869
    • Barash, D.1
  • 15
    • 0024386096 scopus 로고
    • Tree graphs of RNA secondary structures and their comparisons
    • 3507441
    • S.-Y. Le R. Nussinov J. V. Maizel Tree graphs of RNA secondary structures and their comparisons. Computers and Biomedical Research 22 1989 5 461 473 3507441
    • (1989) Computers and Biomedical Research , vol.22 , Issue.5 , pp. 461-473
    • Le, S.-Y.1    Nussinov, R.2    Maizel, J.V.3
  • 16
    • 0024061490 scopus 로고
    • An algorithm for comparing multiple RNA secondary structures
    • B. A. Shapiro An algorithm for comparing multiple RNA secondary structures. Computer Applications in the Biosciences 4 1988 3 387 393
    • (1988) Computer Applications in the Biosciences , vol.4 , Issue.3 , pp. 387-393
    • Shapiro, B.A.1
  • 19
    • 0037388109 scopus 로고    scopus 로고
    • Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures
    • J. Kitagawa Y. Futamura K. Yamamoto Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures. Nucleic Acids Research 31 2003 7 2006 2013
    • (2003) Nucleic Acids Research , vol.31 , Issue.7 , pp. 2006-2013
    • Kitagawa, J.1    Futamura, Y.2    Yamamoto, K.3
  • 20
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structures using tree comparisons
    • B. A. Shapiro K. Zhang Comparing multiple RNA secondary structures using tree comparisons. Computer Applications in the Biosciences 6 1990 4 309 318
    • (1990) Computer Applications in the Biosciences , vol.6 , Issue.4 , pp. 309-318
    • Shapiro, B.A.1    Zhang, K.2
  • 24
  • 25
    • 0030846785 scopus 로고    scopus 로고
    • Characteristics of nucleotide substitution in the hepatitis C virus genome: Constraints on sequence change in coding regions at both ends of the genome
    • D. B. Smith P. Simmonds Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome. Journal of Molecular Evolution 45 1997 3 238 246
    • (1997) Journal of Molecular Evolution , vol.45 , Issue.3 , pp. 238-246
    • Smith, D.B.1    Simmonds, P.2
  • 26
    • 0347634413 scopus 로고    scopus 로고
    • A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for Hepatitis C virus RNA replication
    • S. You D. D. Stump A. D. Branch C. M. Rice A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for Hepatitis C virus RNA replication. Journal of Virology 78 2004 3 1352 1366
    • (2004) Journal of Virology , vol.78 , Issue.3 , pp. 1352-1366
    • You, S.1    Stump, D.D.2    Branch, A.D.3    Rice, C.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.