-
2
-
-
24644443227
-
The Functional Genomics of Noncoding RNA
-
Mattick JS: The Functional Genomics of Noncoding RNA. Science 2005, 309:1527-1528.
-
(2005)
Science
, vol.309
, pp. 1527-1528
-
-
Mattick, J.S.1
-
3
-
-
24644505259
-
Fewer Genes, More Noncoding RNA
-
Claverie JM: Fewer Genes, More Noncoding RNA. Science 2005, 309:1529-1530.
-
(2005)
Science
, vol.309
, pp. 1529-1530
-
-
Claverie, J.M.1
-
4
-
-
12344274135
-
Expanding the 'central dogma': The regulatory role of nonprotein coding genes and implications for the genetic liability to schizophrenia
-
Perkins DO, Jeffries C, Sullivan P: Expanding the 'central dogma': the regulatory role of nonprotein coding genes and implications for the genetic liability to schizophrenia. Mol Psychiatry 2005, 10:69-78.
-
(2005)
Mol Psychiatry
, vol.10
, pp. 69-78
-
-
Perkins, D.O.1
Jeffries, C.2
Sullivan, P.3
-
5
-
-
13444256467
-
MITOMAP: A human mitochondrial genome database-2004 update
-
Brandon MC, Lott MT, Nguyen KC, Spolim S, Navathe SB, Baldi P, Wallace DC: MITOMAP: a human mitochondrial genome database-2004 update. Nucl Acids Res 2005, 33:D611-D613.
-
(2005)
Nucl Acids Res
, vol.33
-
-
Brandon, M.C.1
Lott, M.T.2
Nguyen, K.C.3
Spolim, S.4
Navathe, S.B.5
Baldi, P.6
Wallace, D.C.7
-
6
-
-
27244434788
-
A MicroRNA Signature Associated with Prognosis and Progression in Chronic Lymphocytic Leukemia
-
Calin GA, Ferracin M, Cimmino A, Di Leva G, Shimizu M, Wojcik SE, lorio MV, Visone R, Sever NI, Fabbri M, luliano R, Palumbo T, Pichiorri F, Roldo C, Garzon R, Sevignani C, Rassenti L, Alder H, Volinia S, Liu C, Kipps TJ, Negrini M, Croce CM: A MicroRNA Signature Associated with Prognosis and Progression in Chronic Lymphocytic Leukemia. The New England Journal of Medicine 2005, 353:1793-1801.
-
(2005)
The New England Journal of Medicine
, vol.353
, pp. 1793-1801
-
-
Calin, G.A.1
Ferracin, M.2
Cimmino, A.3
Di Leva, G.4
Shimizu, M.5
Wojcik, S.E.6
Iorio, M.V.7
Visone, R.8
Sever, N.I.9
Fabbri, M.10
Iuliano, R.11
Palumbo, T.12
Pichiorri, F.13
Roldo, C.14
Garzon, R.15
Sevignani, C.16
Rassenti, L.17
Alder, H.18
Volinia, S.19
Liu, C.20
Kipps, T.J.21
Negrini, M.22
Croce, C.M.23
more..
-
8
-
-
27244432205
-
MicroRNAs as Oncogenes and Tumor Suppressors
-
Chen CZ: MicroRNAs as Oncogenes and Tumor Suppressors. The New England Journal of Medicine 2005, 353:1768-1771.
-
(2005)
The New England Journal of Medicine
, vol.353
, pp. 1768-1771
-
-
Chen, C.Z.1
-
9
-
-
28044462415
-
Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics
-
Yassin A, Fredrick K, Mankin AS: Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. PNAS 2005, 102:16620-16625.
-
(2005)
PNAS
, vol.102
, pp. 16620-16625
-
-
Yassin, A.1
Fredrick, K.2
Mankin, A.S.3
-
10
-
-
0027270580
-
Molecular and Biological Changes in the Cold-Adapted "Master Strain" A/AA/6/60 (H2N2) Influenza Virus
-
Herlocher ML, Maassab HF, Webster RG: Molecular and Biological Changes in the Cold-Adapted "Master Strain" A/AA/6/60 (H2N2) Influenza Virus. PNAS 1993, 90:6032-6036.
-
(1993)
PNAS
, vol.90
, pp. 6032-6036
-
-
Herlocher, M.L.1
Maassab, H.F.2
Webster, R.G.3
-
11
-
-
0024320638
-
Detection of common motifs in RNA secondary structures
-
Margalit H, Shapiro BA, Oppenheim AB, Maizel JVJ: Detection of common motifs in RNA secondary structures. Nucleic Acids Res 1989, 17:4829-4845.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 4829-4845
-
-
Margalit, H.1
Shapiro, B.A.2
Oppenheim, A.B.3
Maizel, J.V.J.4
-
12
-
-
0344237374
-
Deleterious mutation prediction in the secondary structure of RNAs
-
Barash D: Deleterious mutation prediction in the secondary structure of RNAs. Nucl Acids Res 2003, 31:6578-6584.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 6578-6584
-
-
Barash, D.1
-
13
-
-
33745873714
-
RNAmute: RNA secondary structure mutation analysis tool
-
Churkin A, Barash D: RNAmute: RNA secondary structure mutation analysis tool. BMC Bioinformatics 2006, 7:221.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 221
-
-
Churkin, A.1
Barash, D.2
-
14
-
-
33749023426
-
Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute
-
Churkin A, Barash D: Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute. EURASIP Journal on Applied Signal Processing 2006, 2006:56246.
-
(2006)
EURASIP Journal on Applied Signal Processing
, vol.2006
, pp. 56246
-
-
Churkin, A.1
Barash, D.2
-
15
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL: Vienna RNA secondary structure server. Nucl Acids Res 2003, 31:3429-3431.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
16
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker IL: Fast folding and comparison of RNA secondary structures. Monatsh Chem 1994, 125:167-188.
-
(1994)
Monatsh Chem
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
-
17
-
-
4444311170
-
Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation
-
Barash D: Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation. Bioinformatics 2004, 20:1861-1869.
-
(2004)
Bioinformatics
, vol.20
, pp. 1861-1869
-
-
Barash, D.1
-
18
-
-
0029883992
-
A graph-topological approach to recognition of pattern and similarity in RNA secondary structures
-
Benedetti G, Morosetti S: A graph-topological approach to recognition of pattern and similarity in RNA secondary structures. Biophys Chem 1996, 59:179-184.
-
(1996)
Biophys Chem
, vol.59
, pp. 179-184
-
-
Benedetti, G.1
Morosetti, S.2
-
19
-
-
0033590783
-
Characterization and comparison of Escherichia coli transfer RNAs by graph theory based on secondary structure
-
Bermudez CI, Daza EE, Andrade E: Characterization and comparison of Escherichia coli transfer RNAs by graph theory based on secondary structure. J Theor Biol 1999, 197:193-205.
-
(1999)
J Theor Biol
, vol.197
, pp. 193-205
-
-
Bermudez, C.I.1
Daza, E.E.2
Andrade, E.3
-
20
-
-
15944416431
-
Classification of non-coding RNA using graph representations of secondary structure
-
Karklin Y, Meraz RF, Holbrook SR: Classification of non-coding RNA using graph representations of secondary structure. Pac Symp Biocomput 2005:4-15.
-
(2005)
Pac Symp Biocomput
, pp. 4-15
-
-
Karklin, Y.1
Meraz, R.F.2
Holbrook, S.R.3
-
21
-
-
33749029091
-
Prediction of Small RNA Conformational Switching Using Fine-Grain Graph Representations and the Wiener Index
-
20050/5/16; Haifa, Israel
-
Avihoo A, Barash D: Prediction of Small RNA Conformational Switching Using Fine-Grain Graph Representations and the Wiener Index: 20050/5/16; Haifa, Israel. 2005.
-
(2005)
-
-
Avihoo, A.1
Barash, D.2
-
22
-
-
33746472381
-
Shape Similarity Measures for the Design of Small RNA Switches
-
A.Avihoo, D.Barash: Shape Similarity Measures for the Design of Small RNA Switches. Biomolecular Structure and Dynamics 2006, 24:17-24.
-
(2006)
Biomolecular Structure and Dynamics
, vol.24
, pp. 17-24
-
-
Avihoo, A.1
Barash, D.2
-
23
-
-
0010677524
-
An edge version of the matrix-tree theorem and the wiener index
-
Merris R: An edge version of the matrix-tree theorem and the wiener index. Linear and Multilinear Algebra 1989, 25:291-296.
-
(1989)
Linear and Multilinear Algebra
, vol.25
, pp. 291-296
-
-
Merris, R.1
-
24
-
-
0024061490
-
An algorithm for comparing multiple RNA secondary structures
-
Shapiro BA: An algorithm for comparing multiple RNA secondary structures. Comput Appl Biosci 1988, 4:387-393.
-
(1988)
Comput Appl Biosci
, vol.4
, pp. 387-393
-
-
Shapiro, B.A.1
-
25
-
-
0033080745
-
Complete suboptimal folding of RNA and the stability of secondary structures
-
Wuchty S, Fontana W, Hofacker IL, Schuster P: Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers 1999, 49:145-165.
-
(1999)
Biopolymers
, vol.49
, pp. 145-165
-
-
Wuchty, S.1
Fontana, W.2
Hofacker, I.L.3
Schuster, P.4
-
26
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M: Mfold web server for nucleic acid folding and hybridization prediction. Nucl Acids Res 2003, 31:3406-3415.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
27
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M, Stiegler P: Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucl Acids Res 1981, 9:133-148.
-
(1981)
Nucl Acids Res
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
28
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill JS: The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 1990, 29:1105-1119.
-
(1990)
Biopolymers
, vol.29
, pp. 1105-1119
-
-
McCaskill, J.S.1
-
29
-
-
0037388109
-
Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures
-
Kitagawa J, Futamura Y, Yamamoto K: Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures. Nucl Acids Res 2003, 31:2006-2013.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 2006-2013
-
-
Kitagawa, J.1
Futamura, Y.2
Yamamoto, K.3
-
30
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Y L, C A, J H, H C, J K, J Y, J L, P P, O R, S K, VN K
-
Y L, C A, J H, H C, J K, J Y, J L, P P, O R, S K, VN K: The nuclear RNase III Drosha initiates microRNA processing. Nature 2003, 425:415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
-
31
-
-
4444230672
-
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5
-
Zeng Y, Cullen BR: Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Nucl Acids Res 2004, 32:4776-4785.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 4776-4785
-
-
Zeng, Y.1
Cullen, B.R.2
-
32
-
-
0037273432
-
Sequence requirements for micro RNA processing and function in human cells
-
Zeng Y, Cullen BR: Sequence requirements for micro RNA processing and function in human cells. RNA 2003, 9:112-123.
-
(2003)
RNA
, vol.9
, pp. 112-123
-
-
Zeng, Y.1
Cullen, B.R.2
-
33
-
-
26444450722
-
Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
-
Kondrashov FA: Prediction of pathogenic mutations in mitochondrially encoded human tRNAs. Hum Mol Genet 2005, 14:2415-2419.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 2415-2419
-
-
Kondrashov, F.A.1
|