Topological accessibility shows a distinct asymmetry in the folds of βα proteins

FEBS Letters

Volumn 580, Issue 22, 2006, Pages 5263-5267

  Taylor, William R ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

Fold asymmetry; N terminal folding; Protein topology

Indexed keywords

PROTEIN DERIVATIVE;

ALPHA CHAIN; AMINO TERMINAL SEQUENCE; ARTICLE; BETA CHAIN; PRIORITY JOURNAL; PROBABILITY; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; STRUCTURE ANALYSIS;

KINETICS; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 33748796668     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2006.08.070     Document Type: Article

References (14)

1. Richardson J.S. The anatomy and taxonomy of protein structure. Adv. Prot. Chem. 34 (1981) 167-339
2. Flores T.P., Moss D.S., and Thornton J.M. An algorithm for automatically generating protein topology cartoons. Prot. Engng. 7 (1994) 31-37
3. Taylor W.R. A periodic table for protein structure. Nature 416 (2002) 657-660
4. Aszódi A., and Taylor W.R. Connection topology of proteins. Comp. Appl. Biol. Sci. 9 (1993) 523-529
5. Baker D. A surprising simplicity to protein folding. Nature 405 (2000) 39-42
6. Plaxco K.W., Simons K.T., and Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277 (1998) 985-994
7. Punta M., and Rost B. Protein folding rates estimated from contact predictions. J. Mol. Biol. 348 (2005) 507-512
8. Taylor W.R. A deeply knotted protein and how it might fold. Nature 406 (2000) 916-919
9. Taylor W.R., and Aszódi A. Protein Geometry, Classification, Topology and Symmetry (2005), Institute of Physics
10. Murzin A.G., Brenner S.E., Hubbard T., and Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247 (1995) 536-540
11. Mushegian A.R., and Koonin E.V. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. USA 93 (1996) 10268-10273
12. Ellis R.J., and Vandervies S.M. Molecular chaperones. Ann. Rev. Biochem. 60 (1991) 321-347
13. Fink A.L. Chaperone-mediated protein folding. Physiol. Rev. 79 (1999) 425-449
14. Phillips D.C. The three-dimensional structure of an enzyme. Sci. Am. 215 (1966) 78-90