Fibre optic microarrays for the detection and enumeration of harmful algal bloom species

African Journal of Marine Science

Volumn 28, Issue 2, 2006, Pages 231-235

  Anderson, D M ^a   Kulis, D ^a   Erdner, D ^a   Ahn, S ^b   Walt, D ^b  

^a WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^b TUFTS UNIVERSITY   (United States)

Author keywords

Alexandrium fundyense; Alexandrium ostenfeldii; Array; HAB; Pseudo nitzschia; rRNA; Sandwich hybridisation; Toxic algae

Indexed keywords

ALGAE; BIODIVERSITY; COASTAL ZONES; CONTAMINATION; FIBER OPTICS; RNA; TOXIC MATERIALS; TOXICITY;

ALGAL BLOOM; BIOMONITORING; COASTAL ZONE; DETECTION METHOD; PLANKTON; SENSOR;

ALEXANDRIUM FUNDYENSE; ALEXANDRIUM OSTENFELDII; ALGAE; ANIMALIA; PSEUDO-NITZSCHIA; PSEUDO-NITZSCHIA AUSTRALIS;

EID: 33748764225     PISSN: 1814232X     EISSN: None     Source Type: Journal    
DOI: 10.2989/18142320609504153     Document Type: Article

References (17)

1. Ahn S, Kulis DM, Erdner DL, Anderson DM, Wall DR (in press) Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species. Applied and Environmental Microbiology
2. Anderson DM (1995) Identification of harmful algal species using molecular probes: an emerging perspective. In: Lassus P, Arzul G, Erard E, Gentien P, Marcaillou C (eds) Harmful Marine Algal Blooms. Technique et Documentation - Lavoisier, Intercept Ltd, Paris, pp 3-13
3. Anderson DM, Andersen P, Bricelj VM, Cullen JJ, Rensel JE (2001) Monitoring and Management Strategies for Harmful Algal Blooms in Coastal Waters. Asia Pacific Economic Program, Singapore, and Intergovernmental Oceanographic Commission, Paris, 268pp
4. Anderson DM, Kulis DM, Keafer BA, Gribble KE, Marin R, Scholin CA (2005) Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research Part II 52(19-21): 2467-2490
5. Ferguson JA, Steemers FJ, Walt DR (2000) High-density fiber optic DNA random microsphere array. Analytical Chemistry 72: 5618-5624
6. Harmful Algal Blooms Observing System (HABSOS) (2000) Design and Implementation Plan for a Pilot Project for the Coastal Component of the U.S. Integrated Ocean Observing System: Detection and Prediction of Harmful Algal Events in the Northern Gulf of Mexico. Workshop Report, 27 November-1 December, 2000, Pensacola Beach, Florida, 65pp. Available at http://www. hpl.umces.edu/projects/HABSOS.pdf
7. Hallegraeff GM (1993) A review of harmful algal blooms and their apparent global increase. Phycologia 32: 79-99
8. Litaker RW, Tester PA (2002) Molecular methods for detecting and characterizing harmful phytoplankton. In: Hurst CJ, Crawford RL, Knudsen GR, McInerney MJ, Stetzenbach LD (eds) Manual of Environmental Microbiology. ASM Press, Washington DC, pp 342-353
9. Michael KL, Taylor LT, Schultz SL, Walt DR (1998) Randomly ordered addressable high-density optical sensor array. Analytical Chemistry 70: 1242-1248
10. Pantano P, Walt DR (1996) Ordered nanowell arrays. Chemistry of Materials 8(12): 2832-2835
11. Scholin CA, Anderson DM (1998) Detection and quantification of HAB species using antibody and DNA probes: progress to date and future research objectives. In: Reguera B, Blanco J, Fernández ML, Wyatt T (eds) Harmful Algae. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO, Santiago de Compostela, pp 253-257
12. Scholin CA, Buck KR, Britschgi T, Cangelosi G, Chavez FP (1996) Identification of Pseudo-nitzschia australis (Bacillariophyceae) using rRNA-targeted probes in whole cell and sandwich hybridization formats. Phycologia 35: 190-197
13. Scholin CE, Doucette GJ, Cembella AD (in press) Prospects for developing automated systems for in situ detection of harmful algae and their toxins. In: Babin M, Roesler C, Cullen J (eds) Monographs on Oceanographic Methodology. UNESCO, Paris
14. Scholin CE, Vrieling L, Peperzak L, Rhodes L, Rublee P (2003) Detection of HAB species using lectin, antibody and DNA probes. In: Hallegraeff GM, Anderson DM, Cembella AD (eds) Manual on Harmful Marine Microalgae. Monographs on Oceanographic Methodology 11. UNESCO, Paris, pp 131-164
15. Shumway SE, Sherman-Caswell S, Hurst JW (1988) Paralytic shellfish poisoning in Maine: monitoring a monster. Journal of Shellfish Research 7: 643-652
16. Townsend DW, Pettigrew NR, Thomas AC (2001) Offshore blooms of the red tide dinoflagellate, Alexandrium sp., in the Gulf of Maine. Continental Shelf Research 21: 347-369
17. Walt DR (2000) Bead-based fiber optic arrays. Science 287: 451-452