메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

Linkage disequilibrium interval mapping of quantitative trait loci

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CONTROLLED STUDY; DNA FLANKING REGION; GENE EXPRESSION; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENETIC MARKER; HAPLOTYPE; INTERMETHOD COMPARISON; LINKAGE ANALYSIS; MAXIMUM LIKELIHOOD METHOD; MICROSATELLITE MARKER; PEDIGREE; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL; THEORETICAL MODEL;

EID: 33748618425     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-54     Document Type: Article
Times cited : (7)

References (47)
  • 2
    • 0028070381 scopus 로고
    • Limits of resolution of genetic linkage studies: Implication for the positional cloning of human disease genes
    • Boehnke M: Limits of resolution of genetic linkage studies: implication for the positional cloning of human disease genes. Am J Hum Genet 1994, 55:379-390.
    • (1994) Am J Hum Genet , vol.55 , pp. 379-390
    • Boehnke, M.1
  • 3
    • 0026949420 scopus 로고
    • Linkage disequilibrium mapping in isolated founder populations: Diastrophic dysphasia in Finland
    • Hästbacka J, de la Chapelle A, Kaitila I, Sistonen P; Weaver A, Lander E: Linkage disequilibrium mapping in isolated founder populations: diastrophic dysphasia in Finland. Nat Genet 1992, 2: 204-211.
    • (1992) Nat Genet , vol.2 , pp. 204-211
    • Hästbacka, J.1    de la Chapelle, A.2    Kaitila, I.3    Sistonen, P.4    Weaver, A.5    Lander, E.6
  • 4
    • 0028894185 scopus 로고
    • Linkage disequilibrium as a gene-mapping tool
    • Jorde L: Linkage disequilibrium as a gene-mapping tool. Am J Hum Genet 1995, 52:11-14.
    • (1995) Am J Hum Genet , vol.52 , pp. 11-14
    • Jorde, L.1
  • 8
    • 0028834034 scopus 로고
    • Likehood methods for locating disease genes in nonequilibriurn populations
    • Kaplan N, Hill W, Weir B: Likehood methods for locating disease genes in nonequilibriurn populations. Am J Hum Genet 1995, 56:18-32.
    • (1995) Am J Hum Genet , vol.56 , pp. 18-32
    • Kaplan, N.1    Hill, W.2    Weir, B.3
  • 9
    • 0028968329 scopus 로고
    • A powerfull likehood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci
    • Terwilliger J: A powerfull likehood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci. Am J Hum Genet 1995, 56:777-787.
    • (1995) Am J Hum Genet , vol.56 , pp. 777-787
    • Terwilliger, J.1
  • 10
    • 0030994211 scopus 로고    scopus 로고
    • Fine scale genetic mapping based on linkage disequilibrium: Theory and applications
    • Xiong M, Guo S: Fine scale genetic mapping based on linkage disequilibrium: theory and applications. Am J Hum Genet 1997, 60:1513-1531.
    • (1997) Am J Hum Genet , vol.60 , pp. 1513-1531
    • Xiong, M.1    Guo, S.2
  • 11
    • 0032539537 scopus 로고    scopus 로고
    • Mapping a disease locus by allelic association
    • Collins & Morton N: Mapping a disease locus by allelic association. Proc Natl Acad Sci USA 1998, 95:1741-1745.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1741-1745
    • Collins, A.1    Morton, N.2
  • 12
    • 0033358667 scopus 로고    scopus 로고
    • Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine scale genetic mapping
    • McPeak M, Strahs A: Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine scale genetic mapping. Am J Hum Genet 1999, 65:858-875.
    • (1999) Am J Hum Genet , vol.65 , pp. 858-875
    • McPeak, M.1    Strahs, A.2
  • 13
    • 0033910724 scopus 로고    scopus 로고
    • Bayesian fine-scale mapping of disease loci by hidden Markov models
    • Morris A, Whittaker J, Balding D: Bayesian fine-scale mapping of disease loci by hidden Markov models. Am J Hum Genet 2000, 67:155-169.
    • (2000) Am J Hum Genet , vol.67 , pp. 155-169
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 14
    • 0032231634 scopus 로고    scopus 로고
    • Disequilibrium likelihoods for fine-scale mapping of a rare allele
    • Graham J, Thompson E: Disequilibrium likelihoods for fine-scale mapping of a rare allele. Am J Hum Genet 1998, 63:1517-1530.
    • (1998) Am J Hum Genet , vol.63 , pp. 1517-1530
    • Graham, J.1    Thompson, E.2
  • 15
    • 0034973984 scopus 로고    scopus 로고
    • High resolution multipoint linkage disequilibrium mapping in the context of a human genome sequence
    • Rannala B, Reeve J: High resolution multipoint linkage disequilibrium mapping in the context of a human genome sequence. Am J Hum Genet 2001, 69:159-178.
    • (2001) Am J Hum Genet , vol.69 , pp. 159-178
    • Rannala, B.1    Reeve, J.2
  • 16
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disaese loci via shattered coalescent modelling of genealogies
    • Morris A, Whittaker J, Balding D: Fine-scale mapping of disaese loci via shattered coalescent modelling of genealogies. Am J Hum Genet 2002, 76:686-707.
    • (2002) Am J Hum Genet , vol.76 , pp. 686-707
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 17
    • 0022649864 scopus 로고
    • The use of measured phenotype information in the analysis of quantitative phenotypes in man
    • Boerwinkle E, Chakraborty R, Sing C: The use of measured phenotype information in the analysis of quantitative phenotypes in man. Ann Hum Genet 1986, 50:181-194.
    • (1986) Ann Hum Genet , vol.50 , pp. 181-194
    • Boerwinkle, E.1    Chakraborty, R.2    Sing, C.3
  • 18
    • 1842787880 scopus 로고    scopus 로고
    • A comparison between methods for linkage disequilibrium fine mapping of quantitative trait loci
    • Abdallah J, Mangin B, Goffinet B, Cierco-Ayrolles C, Pérez-Enciso M: A comparison between methods for linkage disequilibrium fine mapping of quantitative trait loci. Genet Res 2004, 83: 41-47.
    • (2004) Genet Res , vol.83 , pp. 41-47
    • Abdallah, J.1    Mangin, B.2    Goffinet, B.3    Cierco-Ayrolles, C.4    Pérez-Enciso, M.5
  • 19
    • 0036259653 scopus 로고    scopus 로고
    • Simultaneous mining of linkage and linkage disequilibrium to fine map quantitative trait loci in outbred half-sib pedigrees: Revisiting the location of a quantitative trait locus with major effect on milk productionon bovine chromosome 14
    • Farnir F, Grisart B, Coppieters W, Riquet J, Berzi P, Cambisano N, Karim L, Mni M, Moisio S, Simon P, Wagenaar D, Vilkki J, Georges M: Simultaneous mining of linkage and linkage disequilibrium to fine map quantitative trait loci in outbred half-sib pedigrees: revisiting the location of a quantitative trait locus with major effect on milk productionon bovine chromosome 14. Genetics 2002, 161:275-287.
    • (2002) Genetics , vol.161 , pp. 275-287
    • Farnir, F.1    Grisart, B.2    Coppieters, W.3    Riquet, J.4    Berzi, P.5    Cambisano, N.6    Karim, L.7    Mni, M.8    Moisio, S.9    Simon, P.10    Wagenaar, D.11    Vilkki, J.12    Georges, M.13
  • 20
    • 0037396706 scopus 로고    scopus 로고
    • Fine mapping of complex trait genes combinig pedigree and linkage disequilibriurn information: A bayesian unified framework
    • Pérez-Enciso M: Fine mapping of complex trait genes combinig pedigree and linkage disequilibriurn information: a bayesian unified framework. Genetics 2003, 163:1497-1510.
    • (2003) Genetics , vol.163 , pp. 1497-1510
    • Pérez-Enciso, M.1
  • 21
    • 0034055765 scopus 로고    scopus 로고
    • Fine mapping of quantitative trait loci using linkage disequilibrium with closely linked marker loci
    • Meuwissen T, Goddard M: Fine mapping of quantitative trait loci using linkage disequilibrium with closely linked marker loci. Genetics 2000, 155:421-430.
    • (2000) Genetics , vol.155 , pp. 421-430
    • Meuwissen, T.1    Goddard, M.2
  • 22
    • 0035543447 scopus 로고    scopus 로고
    • Prediction of identity by descent probabilities from marker-haplotypes
    • Meuwissen T, Goddard M: Prediction of identity by descent probabilities from marker-haplotypes. Genet Sel Evol 2001, 33: 605-634.
    • (2001) Genet Sel Evol , vol.33 , pp. 605-634
    • Meuwissen, T.1    Goddard, M.2
  • 23
    • 15544365509 scopus 로고    scopus 로고
    • Coalescent-based association mapping and fine mapping of complex trait loci
    • Zöllner S, Pritchard J: Coalescent-based association mapping and fine mapping of complex trait loci. Genetics 2005, 169: 1071-1092.
    • (2005) Genetics , vol.169 , pp. 1071-1092
    • Zöllner, S.1    Pritchard, J.2
  • 24
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • In Edited by: Balding D, Bishop M, Cannings C. Wiley
    • Nordborg M: Coalescent theory. In Handbook of statistical genetics Edited by: Balding D, Bishop M, Cannings C. Wiley; 2001:179-212.
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • Nordborg, M.1
  • 26
    • 1942453327 scopus 로고    scopus 로고
    • Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci
    • Grapes L, Dekkers J, Rothschild M, Fernando R: Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci. Genetics 2004, 166:1561-1570.
    • (2004) Genetics , vol.166 , pp. 1561-1570
    • Grapes, L.1    Dekkers, J.2    Rothschild, M.3    Fernando, R.4
  • 27
    • 84872278556 scopus 로고    scopus 로고
    • Optimal haplotype structure for linkage disequilibrium-based fine mapping of quantitative trait loci using identity-by-descent
    • in press
    • Grapes L, Firat M, Dekkers J, Rothschild M, Fernando R: Optimal haplotype structure for linkage disequilibrium-based fine mapping of quantitative trait loci using identity-by-descent. Genetics in press.
    • Genetics
    • Grapes, L.1    Firat, M.2    Dekkers, J.3    Rothschild, M.4    Fernando, R.5
  • 28
    • 0009796298 scopus 로고    scopus 로고
    • Introduction to quantitative genetics
    • Falconer D, Mackay T: Introduction to quantitative genetics. Longman 4 1996.
    • (1996) Longman , vol.4
    • Falconer, D.1    Mackay, T.2
  • 29
    • 0028298036 scopus 로고
    • Maximum-likelihood estimation of gene location by linkage disequilibrium
    • Hill W, Weir B: Maximum-likelihood estimation of gene location by linkage disequilibrium. Am J Hum Genet 1994, 54: 705-714.
    • (1994) Am J Hum Genet , vol.54 , pp. 705-714
    • Hill, W.1    Weir, B.2
  • 30
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L: Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet 1999, 22: 139-144.
    • (1999) Nat Genet , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 31
    • 0009287070 scopus 로고    scopus 로고
    • Gametic disequilibrium mapping: Potential applications in livestock
    • abstracts
    • Baret P, Hill W: Gametic disequilibrium mapping. potential applications in livestock. Animal Breeding abstracts 1997, 65: 309-318.
    • (1997) Animal Breeding , vol.65 , pp. 309-318
    • Baret, P.1    Hill, W.2
  • 32
    • 0001017871 scopus 로고
    • Solution of a process of random genetic drift with a continuous model
    • Kimura M: Solution of a process of random genetic drift with a continuous model. Proc Nat Acad Sci USA 1955, 41:144-150.
    • (1955) Proc Nat Acad Sci USA , vol.41 , pp. 144-150
    • Kimura, M.1
  • 33
    • 0032827782 scopus 로고    scopus 로고
    • The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits
    • Long A, Langley C: The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits. Genome Res 1999, 9:720-731.
    • (1999) Genome Res , vol.9 , pp. 720-731
    • Long, A.1    Langley, C.2
  • 35
    • 0031911190 scopus 로고    scopus 로고
    • Likelihood analysis of disequilibrium mapping, and related problems
    • Rannala B, Slatkin M: Likelihood analysis of disequilibrium mapping, and related problems. Am J Hum Genet 1998, 62:459-473.
    • (1998) Am J Hum Genet , vol.62 , pp. 459-473
    • Rannala, B.1    Slatkin, M.2
  • 36
    • 10044232695 scopus 로고    scopus 로고
    • Algorithms for inferring haplotypes
    • Niu T: Algorithms for inferring haplotypes. Genetic Epidemiology 2004, 27:334-347.
    • (2004) Genetic Epidemiology , vol.27 , pp. 334-347
    • Niu, T.1
  • 37
    • 2342642816 scopus 로고    scopus 로고
    • Little loss information due to unknown phase for fine-scale linkage disequilibrium mapping with single-nucleotide-polymorphism genotype data
    • Morris A, Whittaker J, Balding D: Little loss information due to unknown phase for fine-scale linkage disequilibrium mapping with single-nucleotide-polymorphism genotype data. Am J Hum Genet 2004, 74:945-953.
    • (2004) Am J Hum Genet , vol.74 , pp. 945-953
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 38
    • 13744254873 scopus 로고    scopus 로고
    • The role of pedigree information in combined linkage disequilibrium and linkage mapping of quantitative trait loci in a general complex pedigree
    • Lee S, van der Werf J: The role of pedigree information in combined linkage disequilibrium and linkage mapping of quantitative trait loci in a general complex pedigree. Genetics 2005, 169:455-466.
    • (2005) Genetics , vol.169 , pp. 455-466
    • Lee, S.1    van der Werf, J.2
  • 39
    • 0024508964 scopus 로고
    • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander B, Botstein D: Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 1989, 121:185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, B.1    Botstein, D.2
  • 40
    • 0027971975 scopus 로고
    • Constructing confidence intervals for QTL location
    • Mangin B, Goffinet B, Rebaï A: Constructing confidence intervals for QTL location. Genetics 1994, 138:1301-1308.
    • (1994) Genetics , vol.138 , pp. 1301-1308
    • Mangin, B.1    Goffinet, B.2    Rebaï, A.3
  • 41
    • 0030068965 scopus 로고    scopus 로고
    • Confidence intervals in QTL mapping by bootstrapping
    • Visscher P, Thompson R, Haley C: Confidence intervals in QTL mapping by bootstrapping. Genetics 1996, 143:1013-1020.
    • (1996) Genetics , vol.143 , pp. 1013-1020
    • Visscher, P.1    Thompson, R.2    Haley, C.3
  • 42
    • 0033912563 scopus 로고    scopus 로고
    • Haplotype fine mapping by evolutionary trees
    • Lam J, Roeder K, Devlin B: Haplotype fine mapping by evolutionary trees. Am J Hum Genet 2000, 66:659-667.
    • (2000) Am J Hum Genet , vol.66 , pp. 659-667
    • Lam, J.1    Roeder, K.2    Devlin, B.3
  • 43
    • 1442338504 scopus 로고    scopus 로고
    • The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage
    • Lee S, Julius H, van der Werf J: The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage. Genet Set Evol 2004, 36:145-161.
    • (2004) Genet Set Evol , vol.36 , pp. 145-161
    • Lee, S.1    Julius, H.2    van der Werf, J.3
  • 45
    • 0141538081 scopus 로고    scopus 로고
    • Linkage disequilibrium fine mapping of quantitative trait loci. A simulation study
    • Abdallah J, Goffinet B, Cierco-Ayrolles C, Pérez-Enciso M: Linkage disequilibrium fine mapping of quantitative trait loci. A simulation study. Genet Sel Evol 2003, 35:513-532.
    • (2003) Genet Sel Evol , vol.35 , pp. 513-532
    • Abdallah, J.1    Goffinet, B.2    Cierco-Ayrolles, C.3    Pérez-Enciso, M.4
  • 46
    • 0014236991 scopus 로고
    • Rates and probabilities of fixation for two locus random mating finite populations without selection
    • Karlin S, McGregor J: Rates and probabilities of fixation for two locus random mating finite populations without selection. Genetics 1968, 58:141-159.
    • (1968) Genetics , vol.58 , pp. 141-159
    • Karlin, S.1    McGregor, J.2
  • 47
    • 0024528762 scopus 로고
    • Diffusion Approximations of the two-locus Wright-Fisher model
    • Ethier S, Nagylaki T: Diffusion Approximations of the two-locus Wright-Fisher model. J Math Biol 1989, 27:17-28.
    • (1989) J Math Biol , vol.27 , pp. 17-28
    • Ethier, S.1    Nagylaki, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.