Terahertz signal transmission in molecular systems

International Journal of High Speed Electronics and Systems

Volumn 16, Issue 2, 2006, Pages 669-675

  Yan, Liuming ^a   Ma, Yuefei ^a   Seminario, Jorge M ^a  

^a Texas AandM University   (United States)

Author keywords

DNA; DSP; Molecular dynamics; Terahertz electronics; THz; Vibronics

Indexed keywords

DIGITAL SIGNAL PROCESSING; DNA; HYDROGEN BONDS; MOLECULAR DYNAMICS; MOLECULAR VIBRATIONS; SIGNAL ENCODING;

MOLECULAR SYSTEMS; TERAHERTZ SIGNAL TRANSMISSION; VIBRATIONAL MOVEMENTS; VIBRONICS;

MOLECULAR STRUCTURE;

EID: 33748444933     PISSN: 01291564     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0129156406003928     Document Type: Conference Paper

References (15)

1. "65-Nanometer Process Technology Extends Benefits of Moore' Law", http://www.intel.com/technology/silicon/si08042.htm.
2. J.M., Seminario, et al., "Scenarios for Molecular-Level Signal Processing", Proc. IEEE, 2005. Submitted.
3. K.M., Ottemann, W. Xiao, Y.-K. Shin, D.E. Koshland, Jr., "A Piston Model for Transmembrane Signaling of the Aspartate Receptor", Science, 1999. 285(1999), pp. 1751-1754.
4. M., Gerstein, C. Chothia, "Signal Transduction: Proteins in Motion", Science, 285(1999), pp. 1682-1683.
5. E.W., Yu, D.E. Koshland, Jr., "Propagating conformational changes over long (and short) distances in proteins", PNAS, 98(2001), pp. 9517-9520.
6. H.Y., Ogawa, H., Y. Qiu, C.M. Ogata, K.S. Misono, "Crystal Structure of Hormone-bound Atrial Natriuretic Peptide Receptor Extracellular Domain: Rotation mechanism for transmembrane signal transduction", J. Biol. Chem., 279(2004), pp. 28625-28631.
7. O., Kwon, D. Georgellis, E.C.C. Lin, Rotational On-off Switching of a Hybrid Membrane Sensor Kinase Tar-ArcB in Escherichia coli. J. Biol. Chem., 278(2003), pp. 13192-13195.
8. S.A., Chervitz, J.J. Falke, "Molecular mechanism of transmembrane signaling by the aspartate receptor: A model", PNAS, 93(1996), pp. 2545-2550.
9. J.M. Seminario, P.A. Derosa, L.E. Cordova, B.H. Bozard, "A Molecular Device Operating at Terahertz Frequencies", IEEE Trans. Nanotech., 3(2004), pp. 215-218.
10. J.M. Seminario, P.A. Derosa, B.H. Bozard, K. Chagarlamudi, "Vibrational Study of a Molecular Device using Molecular Dynamics Simulations", J. Nanoscience Nanotech, 5(2005), pp. 1-11.
11. NAMD2 was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign.
12. L. Kalé, R. Skeel, M. Bhandarkar, R. Brunner, A. Gursoy, N. Krawetz, J. Phillips, A. Shinozaki, K. Varadarajan, K. Schulten, "NAMD2: Greater scalability for parallel molecular dynamics", J. Comput. Phys., 151(1991), pp. 283-312.
13. A.D.J., MacKerell, D. Bashford, M. Bellott, R.L.J. Dunbrack, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, W.E.I. Reiher, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiórkiewicz-Kuczera, D. Yin, M. Karplus, "All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins", J. Phys. Chem. B, 102(1998), pp. 3586-3616.
14. R.W., Hockney, "Potential calculation and some applications", Methods Comput. Phys., 9(1970), pp. 136-211.
15. Labview Analysis concept. National Instruments, 2004.