-
1
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension of the optimal path
-
Shindyalov I., and Bourne P. Protein structure alignment by incremental combinatorial extension of the optimal path. Protein Eng. 11 (1998) 739-747
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.1
Bourne, P.2
-
2
-
-
0030017889
-
Analysis of topological and nontopological structural similarities in the PDB: new examples with old structures
-
Alexandrov N., and Fischer D. Analysis of topological and nontopological structural similarities in the PDB: new examples with old structures. Proteins 25 (1996) 354-365
-
(1996)
Proteins
, vol.25
, pp. 354-365
-
-
Alexandrov, N.1
Fischer, D.2
-
3
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
4
-
-
0034740230
-
AI-based algorithms for protein surface comparisons
-
Pickering S., Bulpitt A., Efford N., Gold N., and Westhead D. AI-based algorithms for protein surface comparisons. Comput. Chem. 26 (2001) 79-84
-
(2001)
Comput. Chem.
, vol.26
, pp. 79-84
-
-
Pickering, S.1
Bulpitt, A.2
Efford, N.3
Gold, N.4
Westhead, D.5
-
5
-
-
0028230909
-
Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities
-
Fischer D., Wolfson H., Lin S., and Nussinov R. Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities. Protein Sci. 3 (1994) 769-778
-
(1994)
Protein Sci.
, vol.3
, pp. 769-778
-
-
Fischer, D.1
Wolfson, H.2
Lin, S.3
Nussinov, R.4
-
6
-
-
32044474167
-
Protein classification by matching and clustering surface graphs
-
Lozano M.A., and Escolano F. Protein classification by matching and clustering surface graphs. Pattern Recognition 39 4 (2006) 499-736
-
(2006)
Pattern Recognition
, vol.39
, Issue.4
, pp. 499-736
-
-
Lozano, M.A.1
Escolano, F.2
-
7
-
-
1642410939
-
A method of comparing protein molecular surface based on normal vectors with attributes and its application to function identification
-
Kaneta Y., et al. A method of comparing protein molecular surface based on normal vectors with attributes and its application to function identification. Proceedings of the Joint Conference on Information Science (2002)
-
(2002)
Proceedings of the Joint Conference on Information Science
-
-
Kaneta, Y.1
-
9
-
-
0036288284
-
Identification of protein functions from a molecular surface database, ef-site
-
Kinoshita K., Furui J., and Nakamura H. Identification of protein functions from a molecular surface database, ef-site. Struct. Funct. Genomics 2 1 (2002) 9-22
-
(2002)
Struct. Funct. Genomics
, vol.2
, Issue.1
, pp. 9-22
-
-
Kinoshita, K.1
Furui, J.2
Nakamura, H.3
-
10
-
-
0346494936
-
SURFACE: a database of protein surface regions for functional annotation
-
Ferrè F., et al. SURFACE: a database of protein surface regions for functional annotation. Nucl. Acid Res. 32 (2004) 240-244
-
(2004)
Nucl. Acid Res.
, vol.32
, pp. 240-244
-
-
Ferrè, F.1
-
11
-
-
24344500271
-
Finding patterns on protein surfaces: algorithms and applications to protein classification
-
Wang X. Finding patterns on protein surfaces: algorithms and applications to protein classification. IEEE Trans. Knowl. Data Eng. 17 8 (2005) 1065-1078
-
(2005)
IEEE Trans. Knowl. Data Eng.
, vol.17
, Issue.8
, pp. 1065-1078
-
-
Wang, X.1
-
13
-
-
0032146156
-
Deciphering cryptic similarities in protein binding sites
-
Kauvar L., and Villar H. Deciphering cryptic similarities in protein binding sites. Curr. Opin. Biotechnol. 9 4 (1998) 390-394
-
(1998)
Curr. Opin. Biotechnol.
, vol.9
, Issue.4
, pp. 390-394
-
-
Kauvar, L.1
Villar, H.2
-
14
-
-
0021107965
-
Solvent-accessible surface of proteins and nucleic acids
-
Connolly M. Solvent-accessible surface of proteins and nucleic acids. Science 221 (1983) 709-713
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.1
-
15
-
-
2942708194
-
Surfcomp: a novel graph-based approach to molecular surface comparison
-
Hofbauer C., Lohninger H., and Aszódi A. Surfcomp: a novel graph-based approach to molecular surface comparison. Chem. Inf. Comput. Sci. 44 (2004) 837-847
-
(2004)
Chem. Inf. Comput. Sci.
, vol.44
, pp. 837-847
-
-
Hofbauer, C.1
Lohninger, H.2
Aszódi, A.3
-
17
-
-
0029546298
-
Statistical classification and segmentation of biomolecular surfaces
-
Schillo C., Herrmann G., Ackermann F., Posch S., and Sagerer G. Statistical classification and segmentation of biomolecular surfaces. Proceedings of the International Conference on Image Processing (1995) 560-563
-
(1995)
Proceedings of the International Conference on Image Processing
, pp. 560-563
-
-
Schillo, C.1
Herrmann, G.2
Ackermann, F.3
Posch, S.4
Sagerer, G.5
-
19
-
-
0035336812
-
A developer's survey of polygonal simplification algorithms
-
Luebke D. A developer's survey of polygonal simplification algorithms. IEEE Comput. Graph. Appl. 21 3 (2001) 24-35
-
(2001)
IEEE Comput. Graph. Appl.
, vol.21
, Issue.3
, pp. 24-35
-
-
Luebke, D.1
-
20
-
-
0036794695
-
Polyhedral surface decomposition with applications
-
Zuckerberger E., Tal A., and Shlafman S. Polyhedral surface decomposition with applications. Comput. Graph. 26 5 (2002) 733-743
-
(2002)
Comput. Graph.
, vol.26
, Issue.5
, pp. 733-743
-
-
Zuckerberger, E.1
Tal, A.2
Shlafman, S.3
-
21
-
-
0033207260
-
Partitioning 3D surface meshes using watershed segmentation
-
Mangan A., and Whitaker R. Partitioning 3D surface meshes using watershed segmentation. IEEE Trans. Vis. Comput. Graph. 5 4 (1999) 308-321
-
(1999)
IEEE Trans. Vis. Comput. Graph.
, vol.5
, Issue.4
, pp. 308-321
-
-
Mangan, A.1
Whitaker, R.2
-
22
-
-
0031271697
-
3D part segmentation using simulated electrical charge distributions
-
Wu K., and Levine M. 3D part segmentation using simulated electrical charge distributions. IEEE Trans. Pattern Anal. Mach. Intell. 19 11 (1997) 1223-1235
-
(1997)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.19
, Issue.11
, pp. 1223-1235
-
-
Wu, K.1
Levine, M.2
-
24
-
-
5444266636
-
Constant curvature region decomposition of 3D-mesh by a mixed approach vertex-triangle
-
Lavoué G., Dupont F., and Baskurt A. Constant curvature region decomposition of 3D-mesh by a mixed approach vertex-triangle. Proceedings of the WSCG (2004) 245-252
-
(2004)
Proceedings of the WSCG
, pp. 245-252
-
-
Lavoué, G.1
Dupont, F.2
Baskurt, A.3
-
27
-
-
0029881007
-
MOLMOL: a program for display and analysis of macromolecular structures
-
Koradi R., Billeter M., and Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. Mol. Graph. 14 (1996) 51-55
-
(1996)
Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
28
-
-
0033954256
-
The protein data bank
-
Berman H., Westbrook J., Feng Z., Gilliland G., Bhat T., Weissig H., Shindyalov I., and Bourne P. The protein data bank. Nucl. Acids Res. 28 1 (2000) 235-242
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
29
-
-
84893405732
-
Data clustering: a review
-
Jain A.K., et al. Data clustering: a review. ACM Comput. Surv. 31 3 (1999) 264-323
-
(1999)
ACM Comput. Surv.
, vol.31
, Issue.3
, pp. 264-323
-
-
Jain, A.K.1
-
31
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B., and Nicholls A. Classical electrostatics in biology and chemistry. Science 268 (1995) 1144-1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
32
-
-
84986486656
-
A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation
-
Nicholls A., and Honig B. A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation. J. Comput. Chem. 12 (1990) 435-445
-
(1990)
J. Comput. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.2
-
33
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., and Doolittle R. A simple method for displaying the hydropathic character of a protein. Mol. Biol. 157 1 (1982) 105-132
-
(1982)
Mol. Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.2
-
35
-
-
0027185404
-
A method to configure protein side-chains from the main-chain trace in homology modelling
-
Eisenmenger F., Argos P., and Abagyan R. A method to configure protein side-chains from the main-chain trace in homology modelling. Mol. Biol. 231 3 (1993) 849-860
-
(1993)
Mol. Biol.
, vol.231
, Issue.3
, pp. 849-860
-
-
Eisenmenger, F.1
Argos, P.2
Abagyan, R.3
-
36
-
-
0033977962
-
SCOP: a structural classification of proteins database
-
Lo Conte L., Ailey B., Hubbard T., Brenner S., Murzin A., and Chothia C. SCOP: a structural classification of proteins database. Nucl. Acids Res. 28 1 (2000) 257-259
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.1
, pp. 257-259
-
-
Lo Conte, L.1
Ailey, B.2
Hubbard, T.3
Brenner, S.4
Murzin, A.5
Chothia, C.6
-
37
-
-
0037246767
-
The CATH database: an extended protein family resource for structural and functional genomics
-
Pearl F., et al. The CATH database: an extended protein family resource for structural and functional genomics. Nucl. Acids Res. 31 1 (2003) 452-455
-
(2003)
Nucl. Acids Res.
, vol.31
, Issue.1
, pp. 452-455
-
-
Pearl, F.1
-
38
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
Sippl M. Recognition of errors in three-dimensional structures of proteins. Proteins: Struct. Funct. Genet. 17 (1993) 355-362
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.17
, pp. 355-362
-
-
Sippl, M.1
|