Complete nucleotide sequences and gene organization of mitochondrial genome of Bufo gargarizans

Mitochondrion

Volumn 6, Issue 4, 2006, Pages 186-193

  Cao, Sen Yang ^a   Wu, Xiao Bing ^a,b   Yan, Peng ^a   Hu, Yu Ling ^a   Su, Xia ^a   Jiang, Zhi Gang ^b  

^a ANHUI NORMAL UNIVERSITY   (China)

^b INSTITUTE OF ZOOLOGY   (China)

Author keywords

Bufo gargarizans; Mitochondrial genome; Phylogenetic tree

Indexed keywords

MITOCHONDRIAL DNA; PROTEIN; RIBOSOME RNA; RNA 16S; TRANSFER RNA;

AMPLICON; ANIMAL TISSUE; ARTICLE; BASE PAIRING; BIOINFORMATICS; CONTROLLED STUDY; DNA SEQUENCE; FROG; GENETIC ORGANIZATION; GENOME; MAXIMUM LIKELIHOOD METHOD; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TOAD;

ANIMALS; BUFONIDAE; CLUSTER ANALYSIS; DNA, MITOCHONDRIAL; GENE ORDER; GENES, MITOCHONDRIAL; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ANURA; BUFO GARGARIZANS;

EID: 33748201529     PISSN: 15677249     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mito.2006.07.003     Document Type: Article

References (42)

1. Anderson S., Bankier A.T., Barrell B.G., de Bruijn M.H.L., Coulson A.R., Drouin J., Eperon I.C., Nierlich D.P., Roe B.A., Sanger F., Schreier P.H., Smith A.J.H., Staden R., and Young I.G. Sequence and organization of the human mitochondrial genome. Nature 290 (1981) 457-465
2. Avis J.C. Molecular Markers, Natural History and Evolution (1994), Champman & Hall, New York pp. 511
3. Brown W.M. Evolution of animal mitochondrial DNA. In: Nei M., and Koehn R.K. (Eds). Evolution of Genes and Proteins (1983), Sinauer, Sunderland, MA 62-88
4. Boore J.L. Complete mitochondrial genome sequence of the polychaete annelid Platynereis dumerilii. Mol. Biol. Evol. 18 (2001) 1413-1416
5. Boore J.L. Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura. BMC Genomics 5 1 (2004) 67
6. Coebel A.M., Donnelly J.M., and Atz M.Z. PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase I, and cytochrome b in bufonids and other frogs, and an overview of PCR primers which have a amplified DNA in amphibians successfully. Mol. Phylogenet. Evol. 11 1 (1999) 163-199
7. Duellman W.E. On the classification of frogs. Occ. Pap. Mus. Nat. Hist. Univ. Kansas 42 (1975) 1-15
8. Duellman W.E., and Trueb L. Biology of Amphibians (1986), McGraw-Hill Book Co., New York
9. Duellman, W.E., 1993. Amphibian species of the world: additions and corrections. Univ. Kansas, Mus. Nat. Hist., Spec. Publ. 21, 1-372.
10. Feller A.E., and Hedges S.B. Molecular evidence for the early history of living amphibians. Mol. Phylogenet. Evol. 9 (1998) 509-516
11. Ford L.S., and Cannatella D.C. The major clades of frogs. Herp. Monogr. 7 (1993) 94-117
12. Frost D.R. Amphibian Species of the World: A Taxonomic and Geographical Reference (1985), Allen Press and Assoc. Syst. Coll., Lawerence, Kansas
13. Graybeal A. The phylogenetic utility of cytochrome b: lessons from bufonid frogs. Mol. Phylogenet. Evol. 2 (1993) 256-269
14. Graybeal A. Phylogenetic relationships of bufonids frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation. Zool. J. Linn. Soc. 119 (1997) 297-338
15. Haas A. Phylogeny of frogs as inferred from primarily larval characters (Amphibia: Anura). Cladistics 19 (2003) 23-89
16. Hay J.M., Ruvinsky I., Hedges S.B., and Maxson L.R. Phylogenetic relationships of amphibian families inferred from DNA sequences of mitochondrial 12S and 16S ribosomal RNA genes. Mol. Biol. Evol. 12 5 (1995) 928-937
17. Hedges S.B., and Maxson L.R. A molecular perspective on lissamphibian phylogeny. Herp. Monogr. 7 (1993) 27-42
18. Hixson J.E., Wong T.W., and Clayton D.A. Both the consevered and divergent 5′-flanking sequences are required for initiation at human mitochondrial origin of light strand replication. J. Biol. Chem. 261 (1986) 2384-2390
19. Jiang J.P., and Zhou K.Y. Evolutionary Relationships among Chinese Ranid frogs inferred from mitochondrial DNA sequences of 12S rRNA gene. Acta Zool. Sinica 47 1 (2001) 38-44 (in Chinese)
20. Kluge A.G., and Farris J.S. Quantitative phyletics and the evolution of Anuras. Syst. Zool. 18 (1969) 1-32
21. Lin W., Zhang C.F., Zhang Y.D., Shi J., Cai J.L., and Gao J.M. Using RAPD method on systematic evolution of four species in Anura. Zool. Res. 22 4 (2001) 332-336
22. Liu W.Z., Lathrop A., Fu J.Z., Yang D.T., and Murphy R.W. Phylogeny of East Asian Bufonids inferred from mitochondrial DNA sequences (Anura: Amphibia). Mol. Phylogenet. Evol. 14 3 (2000) 423-435
23. Liu Z.Q., Wang Y.Q., and Su B. The mitochondrial genome organization of the rice frog, Fejervarya limnocharis (Amphibia: Anura): a new gene order in the vertebrate mtDNA. Gene 346 (2005) 145-151
24. Macey J.R., Schulte II J.A., Larson A., Fang Z., Wang Y., Tuniyev B.S., and Papenfuss T.J. Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: a case of vicariance and dispersal. Mol. Phylogenet. Evol. 9 (1998) 80-87
25. Macey J.R., Papenfussb T.J., Kuehla J.V., Fourcadea H.M., and Boore J.L. Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genomic sequences. Mol. Phylogenet. Evol. 33 (2004) 22-31
26. Sumida M., Kanamori Y., Kaneda H., Kato Y., Nishioka M., Hasegawa M., and Yonekawa H. Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata. Genes Genet. Syst. 76 5 (2001) 311-325
27. Meyer A., and Zardoya R. The (molecular) phylogenetic relationships of vertebrates. Ann. Rev. Ecol. Evol. 34 (2003) 311-338
28. Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
29. Roe B.A., Ma D.P., Wilson R.K., and Wong J.F.H. The complete nucleotide sequence of the Xenopus Zaevis mitochondrial genome. Biol. Chem. 260 (1985) 9759-9774
30. Ruvinsky I., and Maxson L.R. Phylogenetic relationships among bufonoid frogs (Anura: Neobatrachia) inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 5 (1996) 533-547
31. Rychlik, W. and Rychlik, P., 2000. Oligo Primer Analysis Software, version6.01. Molecular Biology Insights, Inc., Cascade, Colorado.
32. Sambrook J., and David W.R. Molecular Cloning: A Laboratory Manual. Third ed. (2001), Cold Spring Harbor Laboratory Press, New York
33. Shi Y.F., Shan X.N., Li J., Zhang X.M., and Zhang H.J. Sequence and organization of the complete mitochondrial genome of the Indian muntjac (Muntiacus muntjak). Acta Zool. Sinica 49 5 (2003) 629-636 in Chinese
34. Smion C., Fraint F., Beckenbach A., Crespi B., Liu H., and Flook P. Evolution, weighting, and phylogenetic utility of mitochodrial gene sequences and a compilation of conserved ploymersase chain reaction primers. Ann. Entomol. Soc. Am. 87 6 (1994) 651-701
35. * and Other Methods), Version 4.0b8. Sinauer Associates, Sunderland, MA.
36. Webb J.E., Wallwork J.A., and Elgood J.H. Guide to Living Amphibians (1981), The MacMillan Press Ltd., Hong Kong PP. 143-144
37. Wu, X.B., 2001. The conservation genetics and the complete mitochondrial genome of Chinese alligator, Alligator sinensis. Doctoral Dissertation granted by Nanjing Normal University (in Chinese).
38. Wu X.B., Wang Y.Q., Zhou K.Y., Zhu W.Q., Nie J.S., and Wang C.L. Complete mitochondrial DNA sequence of Chinese alligator Alligator sinensisand phylogeny of crocodiles. Chinese Sci. Bull. 48 19 (2003) 2050-2054
39. Yoshinori K., and Mutsumi N. Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles. Mol. Biol. Evol. 16 6 (1999) 784-792
40. Zardoya R., and Meyer A. On the origin of and phylogenetic relationships among living amphibians. Proc. Natl. Acad. Sci. USA 98 (2001) 7380-7383
41. Zhang P., Chen Q.Y., Zhou H., Wang X.L., and Qu L.H. The complete mitochondrial genome of a relic salamander, Ranodon sibiricus (Amphibia: Caudata) and implications for amphibian phylogeny. Mol. Phylogenet. Evol. 28 (2003) 620-626
42. Zhong J., Li G., Liu Z.Q., Li Q.W., and Wang Y.Q. Gene rearrangement of mitochondrial genome in the vertebrate. Acta. Genetica Sinica 32 3 (2005) 322-330 in chinese