Different post-pleistocene histories of Eurasian parids

Journal of Heredity

Volumn 97, Issue 4, 2006, Pages 389-402

  Pavlova, Alexandra ^a,d   Rohwer, Sievert ^b   Drovetski, Sergei V ^c   Zink, Robert M ^a,e  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c UNIVERSITY OF ALASKA ANCHORAGE   (United States)

^d MONASH UNIVERSITY   (Australia)

^e 100 Ecology Building ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL PROTEIN; PROTEIN ND2; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BIRD; CONTROLLED STUDY; EUROPE; GENETIC VARIABILITY; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARUS MAJOR; PARUS MONTANUS; PHYLOGEOGRAPHY; PLEISTOCENE; PRIORITY JOURNAL; SEQUENCE DATABASE; SOUTHEAST ASIA; WILLOW;

ANIMALS; ASIA; DNA, MITOCHONDRIAL; EUROPE; EVOLUTION, MOLECULAR; GENE FLOW; GENETICS, POPULATION; GEOGRAPHY; LOCUS CONTROL REGION; NADH DEHYDROGENASE; PASSERIFORMES; PHYLOGENY; POPULATION DYNAMICS; VARIATION (GENETICS);

PARIDAE; PARUS MAJOR; PARUS MONTANUS;

EID: 33748110079     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esl011     Document Type: Article

References (60)

1. Adams JM. 1997. Global land environments since the last interglacial. Oak Ridge, TN: Oak Ridge National Laboratory. Available from: http://www.esd.ornl. gov/projects/qen/nerc.html.
2. Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge, MA: Harvard University Press.
3. Bandelt H-J, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48.
4. Cramp S, Perrins CM. 1993. Handbook of the birds of Europe, the Middle East and North Africa. Volume 7. Oxford: Oxford University Press.
5. Drovetski SV, Zink RM, Fadeev IV, Nesterov YV, Koblik YA, Red'kin YA, Rohwer S. 2004. Mitochondrial phylogeny of Locustella and related genera. J Avian Biol 35:105-10.
6. Drovetski SV, Zink RM, Rohwer S, Fadeev IV, Nesterov YV, Karagodin I, Red'kin YA. 2004. Complex biogeographic history of a holarctic passerine. Proc R Soc Lond B Biol Sci 271:545-51.
7. Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-91.
8. Fedorov VV, Formozov NA, Surin VL, Valchuk OP, Kerimov AB. Genetic consequences of hybridization between Parus major and P. minor in the Middle Amurland. Zool Zhurnal [in Russian]. Forthcoming.
9. Felsenstein J. 1993. PHYLIP. Version 3.5. Available from: http://evolution.genetics.washington.edu/phylip.html. Accessed 2005 Feb 24.
10. Formozov NA, Kerimov AB, Lopatin VV. 1993. New hybridization zone of the great titmouse and Parus bokharensis in Kazakhstan and relationships in forms of Parus major superspecies. In: Rossomolino OL, editor. Hybridization and the problem of species in vertebrates. Moscow, Russia: Archives of the Zoological Museum Moscow State University. p 118-46 [in Russian].
11. Fu Y-X. 1997. Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147:915-25.
12. Garant D, Kruuk LEB, Wilkin TA, McCleery RH, Sheldon BC. 2005. Evolution driven by differential dispersal within a wild bird population. Nature 433:60-5.
13. Gill FB, Mostrom AM, Mack AL. 1993. Speciation in North American chickadees: I. Patterns of mtDNA genetic divergence. Evolution 47: 195-212.
14. Godoy JA, Negro JJ, Hiraldo F, Donáza JA. 2004. Phylogeography, genetic structure and diversity in the endangered bearded vulture (Gypaetus barbatus, L.) as revealed by mitochondrial DNA. Mol Ecol 13:371-90.
15. Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
16. Hackett SJ. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Mol Phylogenet Evol 5:368-82.
17. Harrap S, Quinn D. 1995. Chickadees, tits, nuthatches, and treecreepers. Princeton, NJ: Princeton University Press.
18. Hewitt GM. 1996. Some genetic consequences of Ice Ages, and their role in divergence and speciation. Biol J Linn Soc 58:247-76.
19. Hewitt GM. 1999. Post-glacial re-colonization of European biota. Biol J Linn Soc 68:87-112.
20. Hewitt GM. 2000. The genetic legacy of the Quaternary Ice Ages. Nature 405:907-13.
21. Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philos Trans R Soc Lond Ser B Biol Sci 359:183-95.
22. Irwin DE, Bensch S, Price TD. 2001. Speciation in a ring. Nature 409:333-7.
23. Ivankina EV, Kerimov AB, Formozov NA. 1997. Song variability and the problem of the "ring of races" in the great tit (Parus major). Byull Mosk O-va Ispyt Prir Otd Biol 102:13-9 [in Russian].
24. Kerimov AB, Formozov NA. 1986. Zones of secondary contacts in ring range of the great tit (south-western Turkmenia. Priamur'e). Bull Moscow Soc Naturalists. p 27-31 [in Russian].
25. Kvist L, Martens J, Ahola A, Orell M. 2001. Phylogeography of a Palearctic sedentary passerine, the willow tit (Parus montanus). J Evol Biol 14:930-41.
26. Kvist L, Martens J, Higuchi H, Nazarenko AA, Valchuk OP, Orell M. 2003. Evolution and genetic structure of the great tit (Parus major) complex. Proc R Soc Lond B Biol Sci 270:1447-54.
27. Kvist L, Ruokonen M, Lumme J, Orell M. 1999. The colonization history and present-day population structure of the European great tit (Parus major major). Heredity 82:495-502.
28. Kvist L, Ruokonen M, Thessing A, Lumme J, Orell M. 1998. Mitochondrial control region polymorphism reveal high amount of gene flow in Fennoscandian willow tit (Parus montanus borealis). Hereditas 128:133-43.
29. Liebers D, Helbig AJ, De Knijff P. 2001. Genetic differentiation and phylogeography of gulls in the Larus cachinnans-fuscus group (Aves: Charadriiformes). Mol Ecol 10:2447-62.
30. Longmire L, Maltbie M, Baker RJ. 1997. Use of "lysis buffer" in DNA isolation and its implication for museum collections. Occasional Papers OP-163. Lubbock, Texas: Museum of Texas Tech University.
31. Nazarenko AA, Valchuk OP, Martens J. 1999. Secondary contact and overlap of Parus major and P. minor populations in the middle Amur river basin. Zool Zhurnal 78:372-81.
32. Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
33. Pavlova A. 2004. Comparative phylogeography of Eurasian birds [PhD dissertation]. St Paul, MN: University of Minnesota.
34. Pavlova A, Zink RM, Drovetski SV, Red'kin Ya, Rohwer S. 2003. Phylogeographic patterns in Motacilla flava and Motacilla citreola: species limits and population history. Auk 120:744-58.
35. Pavlova A, Zink RM, Rohwer S. 2005. Evolutionary history, population genetics and gene flow in the common rosefinch (Carpodacus erythrinus). Mol Phylogenet Evol 36:669-81.
36. Pavlova A, Zink RM, Rohwer S, Koblik EA, Red'kin YA, Fadeev IV, Nesterov EV. 2005. Mitochondrial DNA and plumage evolution in white wagtails. J Avian Biol 36:322-36.
37. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-8.
38. Posada D, Crandall KA. 2001. Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16:37-45.
39. Postma E, van Noordwijk AJ. 2005. Gene flow maintains a large genetic difference in clutch size at a small spatial scale. Nature 433:65-8.
40. Ramos-Onsins SE, Rozas J. 2002. Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19:2092-100.
41. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-7.
42. Ruokonen M, Kvist L. 2002. Structure and evolution of the avian mitochondrial control region. Mol Phylogenet Evol 23:422-32.
43. Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Ehrlich HA. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-91.
44. Salzburger W, Martens J, Nazarenko AA, Sun Y-H, Dallinger R, Sturmbauer C. 2002. Phylogeography of the Eurasian willow tit (Parus montanus) based on DNA sequences of the mitochondrial cytochrome b gene. Mol Phylogenet Evol 24:26-34.
45. Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1070-89.
46. Schneider S, Roessli D, Excoffier L. 2000. Arlequin: a software for population genetic data analysis. Version 2.000. Geneva, Switzerland: Genetics and Biometry laboratory, University of Geneva. Available from: http://lgb.unige.ch/arlequin/. Accessed 2005 Feb 24.
47. Smirenskiy SM. 1986. Ecological-geographic analysis of avifauna of Middle Priamur'e [Avtoreferat of the PhD dissertation]. Moscow, Russia: Moscow State University [in Russian].
48. Stepanyan LS. 2003. Conspectus of the ornithological fauna of Russia and adjacent territories (within the borders of the USSR as a historic region). Moscow, Russia: Academkniga.
49. Swofford DL. 2000. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b2. Sunderland, MA: Sinauer.
50. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7:453-64.
51. Tajima F. 1989. The effect of change in population size on DNA polymorphism. Genetics 123:597-601.
52. Tajima F. 1996. The amount of DNA polymorphism maintained in finite population when the neutral mutation rate varies among sites. Genetics 143:1457-65.
53. Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-26.
54. Tarasov PE, Peyron O, Guiot J, Brewer S, Volkova VS, Bezusko LG, Dorofeyuk NI, Kvavadze EV, Osipova IM, Panova NK. 1999. Last glacial maximum climate of the former Soviet Union and Mongolia reconstructed from pollen and plant macrofossil data. Clim Dyn 15:227-40.
55. Verhulst S, Perrins CM, Riddington R. 1997. Natal dispersal of great tits in patchy environment. Ecology 78:864-72.
56. Zhang D-X, Hewitt GM. 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol Evol 11:247-51.
57. Zink RM. 2005. Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies. Proc R Soc Lond B Biol Sci 272:71-8.
58. Zink RM, Drovetski SV, Questiau S, Fadeev IV, Nesterov EV, Westberg MC, Rohwer S. 2003. Recent evolutionary history of the bluethroat (Luscinia svecica) across Eurasia. Mol Ecol 12:3069-75.
59. Zink RM, Drovetski S, Rohwer S. 2002. Phylogeographic patterns in the great spotted woodpecker (Dendrocopos major) across Eurasia. J Avian Biol 35:175-8.
60. Zink RM, Rohwer S, Drovetski S, Blackwell-Rago RC, Farrell SL. 2002. Holarctic phylogeography and species limits of three-toed woodpeckers. Condor 104:167-70.