메뉴 건너뛰기




Volumn 366, Issue , 2006, Pages 308-322

Long-range correlations of RNA polymerase II promoter sequences across organisms

Author keywords

Consensus sequences; Critical exponents; Long range correlations; Oligonucleotide size distribution; Promoters

Indexed keywords

CORRELATION METHODS; ENZYMES; HUMAN ENGINEERING; NUCLEIC ACID SEQUENCES; OLIGOMERS; SEPARATION;

EID: 33748073789     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2005.10.019     Document Type: Article
Times cited : (20)

References (32)
  • 2
    • 0026946737 scopus 로고
    • Word frequency and entropy of symbolic sequences: a dynamical perspective
    • Ebeling W., and Nicolis G. Word frequency and entropy of symbolic sequences: a dynamical perspective. Chaos, Solitons Fractals 2 (1992) 635
    • (1992) Chaos, Solitons Fractals , vol.2 , pp. 635
    • Ebeling, W.1    Nicolis, G.2
  • 3
    • 0000236451 scopus 로고
    • Characterizing long-range correlations in DNA sequences from wavelet analysis
    • Arneodo A., Bacry E., Graves P.V., and Muzy J.F. Characterizing long-range correlations in DNA sequences from wavelet analysis. Phys. Rev. Lett. 74 (1995) 3293
    • (1995) Phys. Rev. Lett. , vol.74 , pp. 3293
    • Arneodo, A.1    Bacry, E.2    Graves, P.V.3    Muzy, J.F.4
  • 6
    • 0001012115 scopus 로고
    • Correlations in binary sequences and a generalized Zipf analysis
    • Czirok A., Mantegna R.N., Havlin S., and Stanley H.E. Correlations in binary sequences and a generalized Zipf analysis. Phys. Rev. E 52 (1995) 446
    • (1995) Phys. Rev. E , vol.52 , pp. 446
    • Czirok, A.1    Mantegna, R.N.2    Havlin, S.3    Stanley, H.E.4
  • 7
    • 0025833642 scopus 로고
    • Periodicity of DNA coding sequences: implications in gene evolution
    • Tsonis A.A., Elsner J.B., and Tsonis P.A. Periodicity of DNA coding sequences: implications in gene evolution. J. Theor. Biol. 151 (1991) 323
    • (1991) J. Theor. Biol. , vol.151 , pp. 323
    • Tsonis, A.A.1    Elsner, J.B.2    Tsonis, P.A.3
  • 8
    • 0026718403 scopus 로고
    • Chance and statistical significance in protein and DNA sequence analysis
    • Karlin S., and Brendel V. Chance and statistical significance in protein and DNA sequence analysis. Science 257 (1992) 39
    • (1992) Science , vol.257 , pp. 39
    • Karlin, S.1    Brendel, V.2
  • 10
    • 0027458843 scopus 로고
    • Patchiness and correlations in DNA sequence
    • Karlin S., and Brendel V. Patchiness and correlations in DNA sequence. Science 259 (1993) 677
    • (1993) Science , vol.259 , pp. 677
    • Karlin, S.1    Brendel, V.2
  • 11
    • 0031224964 scopus 로고    scopus 로고
    • The 'clustered structure' of the purines/pyrimidines distribution in DNA distinguishes systematically between coding and non-coding sequences
    • Almirantis Y., and Provata A. The 'clustered structure' of the purines/pyrimidines distribution in DNA distinguishes systematically between coding and non-coding sequences. Bull. Math. Biol. 59 (1997) 975
    • (1997) Bull. Math. Biol. , vol.59 , pp. 975
    • Almirantis, Y.1    Provata, A.2
  • 13
    • 0031351245 scopus 로고    scopus 로고
    • Scaling properties of coding and non-coding DNA sequences
    • Provata A., and Almirantis Y. Scaling properties of coding and non-coding DNA sequences. Physica A 247 (1997) 482
    • (1997) Physica A , vol.247 , pp. 482
    • Provata, A.1    Almirantis, Y.2
  • 14
    • 0033531330 scopus 로고    scopus 로고
    • A standard deviation based quantification differentiates coding from non-coding DNA sequences and gives insight to their evolutionary history
    • Almirantis Y. A standard deviation based quantification differentiates coding from non-coding DNA sequences and gives insight to their evolutionary history. Theor. Biol. 196 (1999) 217
    • (1999) Theor. Biol. , vol.196 , pp. 217
    • Almirantis, Y.1
  • 15
    • 84956088098 scopus 로고
    • Long-range correlations and partial 1/F-Alpha spectrum in a noncoding DNA sequence
    • Li W., and Kaneko K. Long-range correlations and partial 1/F-Alpha spectrum in a noncoding DNA sequence. Europhys. Lett. 17 (1992) 655
    • (1992) Europhys. Lett. , vol.17 , pp. 655
    • Li, W.1    Kaneko, K.2
  • 16
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
    • Voss R.F. Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68 (1992) 3805
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805
    • Voss, R.F.1
  • 17
    • 33748079218 scopus 로고    scopus 로고
    • Y. Almirantis, S. Papageorgiou, in: Proceedings of the European Conference on Artificial Life, J.L. Deneubourg, U.L.B., Brussels, 1993.
  • 18
    • 0033211899 scopus 로고    scopus 로고
    • Long- and short-range correlations in genome organization
    • Almirantis Y., and Provata A. Long- and short-range correlations in genome organization. Stat. Phys. 97 (1999) 233
    • (1999) Stat. Phys. , vol.97 , pp. 233
    • Almirantis, Y.1    Provata, A.2
  • 19
    • 0033098958 scopus 로고    scopus 로고
    • Random aggregation models for the formation and evolution of coding and non-coding DNA
    • Provata A. Random aggregation models for the formation and evolution of coding and non-coding DNA. Physica A 264 (1999) 570
    • (1999) Physica A , vol.264 , pp. 570
    • Provata, A.1
  • 20
    • 0033722203 scopus 로고    scopus 로고
    • Fractals from genomes-exact solutions of a biology-inspired problem
    • Hao B.L. Fractals from genomes-exact solutions of a biology-inspired problem. Physica A 282 (2000) 225
    • (2000) Physica A , vol.282 , pp. 225
    • Hao, B.L.1
  • 21
    • 0037114549 scopus 로고    scopus 로고
    • Statistical distributions of oligonucleotide combinations: applications in human chromosomes 21 and 22
    • Katsaloulis P., Theoharis T., and Provata A. Statistical distributions of oligonucleotide combinations: applications in human chromosomes 21 and 22. Physica A 316 (2002) 380
    • (2002) Physica A , vol.316 , pp. 380
    • Katsaloulis, P.1    Theoharis, T.2    Provata, A.3
  • 22
    • 0002753682 scopus 로고    scopus 로고
    • Fractal cantor patterns in the sequence structure of DNA
    • Provata A., and Almirantis Y. Fractal cantor patterns in the sequence structure of DNA. Fractals 8 (2000) 15
    • (2000) Fractals , vol.8 , pp. 15
    • Provata, A.1    Almirantis, Y.2
  • 23
    • 33748071871 scopus 로고    scopus 로고
    • http://www.gene-regulation.com/pub/databases.html. 2004.
  • 26
    • 0025221436 scopus 로고
    • Transcriptional initiation is controlled by upstream GC-box interactions in a TATAA-less promoter
    • Blake M.C., Jambou R.C., Swick A.G., Kahn J.W., and Azizkhan J.C. Transcriptional initiation is controlled by upstream GC-box interactions in a TATAA-less promoter. Mol. Cell Biol. 10 (1990) 6632
    • (1990) Mol. Cell Biol. , vol.10 , pp. 6632
    • Blake, M.C.1    Jambou, R.C.2    Swick, A.G.3    Kahn, J.W.4    Azizkhan, J.C.5
  • 27
    • 0023130291 scopus 로고
    • The ovarian, ecdysterone, and heat-shock-responsive promoters of the Drosophila melanogaster hsp27 gene react very differently to perturbations of DNA sequence
    • Hoffman E.P., Gerring S.L., and Corces V.G. The ovarian, ecdysterone, and heat-shock-responsive promoters of the Drosophila melanogaster hsp27 gene react very differently to perturbations of DNA sequence. Mol. Cell Biol. 7 (1987) 973
    • (1987) Mol. Cell Biol. , vol.7 , pp. 973
    • Hoffman, E.P.1    Gerring, S.L.2    Corces, V.G.3
  • 28
    • 0032876994 scopus 로고    scopus 로고
    • Intron-genome size relationship on a large evolutionary scale
    • Vinogradov A.E. Intron-genome size relationship on a large evolutionary scale. J. Mol. Evol. 49 3 (1999) 376
    • (1999) J. Mol. Evol. , vol.49 , Issue.3 , pp. 376
    • Vinogradov, A.E.1
  • 29
    • 0002232531 scopus 로고
    • Codon usage in higher plant, green algae and cyanobacteria
    • Campbell W.H., and Gowri G. Codon usage in higher plant, green algae and cyanobacteria. Plant Physiol. 92 (1990) 1
    • (1990) Plant Physiol. , vol.92 , pp. 1
    • Campbell, W.H.1    Gowri, G.2
  • 30
    • 2942627515 scopus 로고    scopus 로고
    • Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes
    • Bernaola-Galvan P., Oliver J.L., Carpena P., Clay O., and Bernardi G. Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes. Gene 333 (2004) 121
    • (2004) Gene , vol.333 , pp. 121
    • Bernaola-Galvan, P.1    Oliver, J.L.2    Carpena, P.3    Clay, O.4    Bernardi, G.5
  • 31
    • 0000873069 scopus 로고
    • A method for the solution of certain problems in least squares
    • Levenberg K. A method for the solution of certain problems in least squares. Quart. Appl. Math. 2 (1944) 164
    • (1944) Quart. Appl. Math. , vol.2 , pp. 164
    • Levenberg, K.1
  • 32
    • 0000169232 scopus 로고
    • An algorithm for least-squares estimation of nonlinear parameters
    • Marquardt D. An algorithm for least-squares estimation of nonlinear parameters. SIAM J. Appl. Math. 11 (1963) 431
    • (1963) SIAM J. Appl. Math. , vol.11 , pp. 431
    • Marquardt, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.