Improvements in protein identification confidence and proteome coverage for human liver proteome study by coupling a parallel mass spectrometry/mass spectrometry analysis with multi-dimensional chromatography separation

Analytica Chimica Acta

Volumn 566, Issue 2, 2006, Pages 147-156

  Zhang, Jie ^a   Gao, Mingxia ^a   Tang, Jia ^a   Yang, Pengyuan ^a   Liu, Yinkun ^a   Zhang, Xiangmin ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

2D LC; Human liver proteome; Parallel MS MS analysis

Indexed keywords

BIODIVERSITY; BIOLOGICAL ORGANS; IONIZATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR BIOLOGY;

2D LC; HUMAN LIVER PROTEOME; PARALLEL MS/MS ANALYSIS;

PROTEINS;

LIVER PROTEIN; PROTEOME; TISSUE EXTRACT;

ARTICLE; CELL LYSATE; CELLULAR DISTRIBUTION; COMPARATIVE STUDY; CONTROLLED STUDY; EFFLUENT STANDARD; ELECTROSPRAY MASS SPECTROMETRY; HUMAN; HUMAN TISSUE; LIQUID CHROMATOGRAPHY; LIVER; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR BIOLOGY; NORMAL HUMAN; PARALLEL MASS SPECTROMETRY; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEOMICS; QUADRUPOLE MASS SPECTROMETRY; REPRODUCIBILITY; REVERSED PHASE LIQUID CHROMATOGRAPHY; SAMPLE; SEPARATION TECHNIQUE;

EID: 33748065678     PISSN: 00032670     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aca.2006.03.045     Document Type: Article

References (29)

1. Moore A.W., and Jorgenson J.W. Anal. Chem. 67 (1995) 3448
2. Davis M.T., Beierle J., Bures E.T., McGinley M.D., Mort J., Robinson J.H., Spahr C.S., Yu W., Luethy R., and Patterson S.D. J. Chromatogr. B 752 (2001) 281
3. Wolters D.A., Washburn M.P., and Yates J.R. Anal. Chem. 73 (2001) 5683
4. Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., and Yates III J.R. Nat. Biotechnol. 17 (1999) 676
5. Wang Y., Zhang J., Liu C.L., Gu X., and Zhang X.M. Anal. Chim. Acta 530 (2005) 227
6. Davinder S.N., and Liang L. J. Chromatogr. A 711 (1995) 235
7. Zhen Y.J., Xu N.F., Richardson B., Becklin R., Savage J.R., Blake K., and Peltier J.M. J. Am. Soc. Mass Spectrom. 15 (2004) 803
8. Malmström J., Larsen K., Malmström L., Tufvesson E., Parker K., Marchese J., Williamson B., Patterson D., Martin S., Juhasz P., Westergren-Thorsson G., and Marko-Varga G. Electrophoresis 24 (2003) 3806
9. Bodnar W.M., Blackburn R.K., Krise J.M., and Moseley M.A. J. Am. Soc. Mass Spectrom. 14 (2003) 971
10. Yu L.R., Wang N., and Wu G.D. Chin. Sci. Bull. 45 (2000) 1113
11. Celis J.E., Wolf H., and Östergaard M. Electrophoresis 21 (2000) 2115
12. Cole A.R., Ji H., and Simpson R.J. Electrophoresis 21 (2000) 1772
13. Minowa T., Ohtsuka S.S., and Kamada H.M. Electrophoresis 21 (2000) 1782
14. Dwek M.V., Ross H.A., and Leathem A.J.C. Proteomics 1 (2001) 756
15. Ha G.H., Lee S.U., Kang D.G., Ha N.Y., Kim S.H., Kim J., Bae J.M., Kim J.W., and Lee C.W. Electrophoresis 23 (2002) 2513
16. Lee C.H., Hsiao H.H., Lin C.W., Wu S.P., Huang S.Y., Wu C.Y., Wang A.H.J., and Khoo K.H. Proteomics 3 (2003) 2472
17. Beavis R.C., Chaudhary T., and Chait B.T. Org. Mass Spectrom. 27 (1992) 156
18. Miliotis T., Kjellström S., Nilsson J., Laurell T., Edholm L.E., and Marko-Varga G. Rapid Commun. Mass Spectrom. 16 (2002) 117
19. Thomas H., Havli J., Peychl J., and Shevchenko A. Rapid Commun. Mass Spectrom. 18 (2004) 923
20. Wagner C., Briggs W.T., and Cook R.J. Biochem. Biophys. Res. Commun. 127 (1985) 746
21. Yeo E., and Wagner C. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 210
22. Mathews C.K., and Holde K.E. Biochemistry. 2nd ed. (1995), The Benjamin/Cummings Publishing Company, Inc., San Francisco
23. Tsuchida S., and Sato K. Crit. Rev. Biochem. Mol. Biol. 27 (1992) 337
24. Mentlein R., Reuter G., and Heymann E. Arch. Biochem. Biophys. 240 (1985) 801
25. Pindel E.V., Kedishvili N.Y., Abraham T.L., Brzezinski M.R., Zhang J., Dean R.A., and Bosron W.F. J. Biol. Chem. 272 (1997) 14769
26. Satoh T. Rev. Biochem. Toxicol. 8 (1987) 155
27. Kyte J., and Doolittle R.F. J. Mol. Biol. 157 (1982) 105
28. Wei J., Sun J., Yu W., Jones A., Oeller P., Keller M., Woodnutt G., and Short J.M. J. Proteome Res. 4 (2005) 801
29. Martens L., Damme P.V., Damme J.V., Staes A.E., Timmerman E., Ghesquiere B., Thomas G.R., Vandekerckhove J., and Gevaert K. Proteomics 5 (2005) 3193