Pseudomonas peli sp. nov. and pseudomonas borbori sp. nov., isolated from a nitrifying inoculum

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 8, 2006, Pages 1875-1881

  Vanparys, Bram ^a   Heylen, Kim ^a   Lebbe, Liesbeth ^a   De Vos, Paul ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; RNA 16S;

ARTICLE; BACTERIAL GENE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHROMOSOME BANDING PATTERN; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE AEROBIC RODS AND COCCI; INOCULATION; LIPID COMPOSITION; NITRIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS BORBORI; PSEUDOMONAS MIGULAE; PSEUDOMONAS PELI; PSEUDOMONAS VERONII; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

AQUACULTURE; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NITRITES; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PSEUDOMONAS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; WATER MICROBIOLOGY;

NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS MIGULAE; PSEUDOMONAS VERONII;

EID: 33747893529     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64224-0     Document Type: Article

References (21)

1. Anzai, Y., Kudo, Y. & Oyaizu, H. (1997). The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. Int J Syst Bacteriol 47, 249-251.
2. Anzai, Y., Kim, H., Park, J.-Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
3. Elomari, M., Cordoler, L., Hoste, B., Gillis, M., Izard, D. & Leclerc, H. (1996). DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov. Int J Syst Bacteriol 46, 1138-1144.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Grommen, R., Van Hauteghem, I., Van Wambeke, M. & Verstraete, W. (2002). An improved nitrifying enrichment to remove ammonium and nitrite from freshwater aquaria systems. Aquaculture 211, 115-124.
6. Heyrman, J., Verbeeren, J., Schumann, P., Swings, J. & De Vos, P. (2005). Six novel Arthrobacter species isolated from deteriorated mural paintings. Int J Syst Evol Microbiol 55, 1457-1464.
7. Hildebrand, D. C., Palleroni, N. J., Hendson, M., Toth, J. & Johnson, J. L. (1994). Pseudomonas flavescens sp. nov., isolated from walnut blight cankers. Int J Syst Bacteriol 44, 410-415.
8. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. King, E. O., Ward, M. K. & Rainey, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44, 301-307.
11. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
12. Pearson, W. R. (1990). Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183, 63-98.
13. Peix, A., Berge, O., Rivas, R., Abril, A. & Velázquez, E. (2005). Pseudomonas argentinensis sp. nov., a novel yellow pigment-producing bacterial species, isolated from rhizospheric soil in Córdoba, Argentina. Int J Syst Evol Microbiol 55, 1107-1112.
14. Pot, B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics, pp. 493-521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
15. Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
16. Uchino, M., Kosako, Y., Uchimura, T. & Komagata, K. (2000). Emendation of Pseudomonas straminea Iizuka and Komagata 1963. Int J Syst Evol Microbiol 50, 1513-1519.
17. Vandamme, P., Vancanneyt, M., Pot, B. & 10 other authors (1992). Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int J Syst Bacteriol 42, 344-356.
18. Vanparys, B., Heylen, K., Lebbe, L. & De Vos, P. (2005). Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum. Int J Syst Evol Microbiol 55, 1315-1318.
19. Verhille, S., Baida, N., Dabboussi, F., Hamze, M., Izard, D. & Leclerc, H. (1999). Pseudomonas gessardii sp. nov. and Pseudomonas migulae sp. nov., two new species isolated from natural mineral waters. Int J Syst Bacteriol 49, 1559-1572.
20. Wakabayashi, H. & Egusa, S. (1972). Characteristics of a Pseudomonas sp. from an epizootic of pond-cultured eels (Anguilla japonica). Bull Jpn Soc Sci Fish 38, 577-587.
21. Willems, A., Doignon-Bourcier, F., Goris, J., Coopman, R., de Lajudie, P., De Vos, P. & Gillis, M. (2001). DNA-DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51, 1315-1322.