DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov.

International Journal of Systematic Bacteriology

Volumn 46, Issue 4, 1996, Pages 1138-1144

  Elomari, Malika ^a   Coroler, Loïc ^a   Hoste, Bart ^b   Gillis, Monique ^b   Izard, Daniel ^a   Leclerc, Henri ^a  

^a UNIV LILLE   (France)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; MINERAL WATER;

ARTICLE; BACTERIUM IDENTIFICATION; DNA DNA HYBRIDIZATION; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS; SPECIES DIFFERENCE; THERMOSTABILITY;

BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS FLUORESCENS GROUP; PSEUDOMONAS VERONII;

EID: 0029837467     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-46-4-1138     Document Type: Article

References (55)

1. Aznar, R., E. Alcaide, and E. Garay. 1992. Numerical taxonomy of pseudomonads isolated from water, sediment and eels. Syst. Appl. Microbiol. 14: 235-246.
2. Barrett, E. L., R. E. Solanes, J. S. Tang, and N. J. Palleroni. 1986. Pseudomonas fluorescent biovar V: its resolution into distinct component groups and the relationship of these groups to other P. fluorescens biovars. to P. putida, and to psychrotrophic pseudomonads associated with food spoilage. J. Gen. Microbiol. 132:2709-2721.
3. Beji, A., D. Izard, F. Gavini, H. Leclerc, M. Leseine-Delstanche, and J. Krembel. 1987. A rapid chemical procedure for isolation and purification of chromosomal DNA from Gram-negative Bacilli. Anal. Biochem. 161:18-23.
4. Bischofberger, T. 1983. Oligotrophe Bakterien im natürlichen mineral Wasser und ihre spezifischen Eigenschaften. Dissertation 7230. Eidgenössische technische Hochschule Zürich, Zürich, Switzerland.
5. Bowman, J. P., L. I. Sly, A. C. Hayward, Y. Spiegel, and E. Stackebrandt. 1993. Telluria mixta (Pseudomonas mixta Bowman, Sly, and Hayward 1988) gen. nov., comb. nov., and Telluria chitinolytica sp. nov., soil-dwelling organisms which actively degrade polysaccharides. Int. J. Syst. Bacteriol. 43:120-124.
6. Buttiaux, R., and A. Boudier. 1960. Comportement des bactéries autotrophes dans les eaux minérales conservées en récipients hermétiquement clos. Ann. Inst. Pasteur Lille 11:43-52.
7. Champion, A. B., E. L. Barrett, N. J. Palleroni, R. L. Soderberg, R. Kunisawa, R. Contopoulou, A. C. Wilson, and M. Doudoroff. 1980. Evolution in Pseudomonas fluorescent. J. Gen. Microhiol. 120:485-511.
8. Coroler, L., M. Elomari, B. Hoste, M. Gillis, D. Izard, and H. Leclerc. Pseudomonas rhodesicie, a new species isolated from natural mineral waters. Syst. Appl. Microbiol., in press.
9. Crosa, J. H., D. J. Brenner, and S. Falkow. 1973. Use of a single-strandspecific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homo- and heteroduplexes. J. Bacteriol. 115:904-911.
10. De Ley, J. 1970. Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J. Bacteriol. 101:737-754.
11. De Ley, J. 1992. The Proteobacteria: ribosomal RNA cistron similarities and bacterial taxonomy, p. 2109-2140. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed., vol. 2. Springer-Verlag, New York.
12. De Vos, P., and J. De Ley. 1983. Intra- and intergeneric similarities of Pseudomonas and Xanthomonas ribosomal ribonucleic acid cistrons. Int. J. Syst. Bacteriol. 33:487-509.
13. De Vos, P., K. Kersters, E. Falsen, B. Pot, M. Gillis, P. Segers, and J. De Ley. 1985. Comamonas David and Park 1962 gen. nov., nom. rev. emend., and Comamonas terrigena Hugh 1962 sp. nov., nom. rev. Int. J. Syst. Bacteriol. 35:443-453.
14. De Vos, D., A. Lim, P. De Vos, A. Sarniguet, K. Kersters, and P. Cornelis. 1993. Detection of the outer membrane lipoprotein I and its gene in fluorescent and non-fluorescent pseudomonads: implications for taxonomy and diagnosis. J. Gen. Microbiol. 139:2215-2223.
15. Ducluzeau, R. 1976. La signification du nombre et de la nature des microorganismes telluriques présents dans l'eau minérale à l'émergence. Ann. Ist. Suer Sanita 12:170-176.
16. Ducluzeau, R., J. M. Bochand, and S. Dufresne. 1976. La microflore autochtone de l'eau minérale: nature, caractères physiologiques, signification hygiénique. Med. Nutr. 12:115-119.
17. Elomari, M., L. Coroler, D. Izard, and H. Leclerc. 1995. A numerical taxonomic study of fluorescent Pseudomonas strains isolated from natural mineral waters. J. Appl. Bacteriol. 78:71-81.
18. Cardan, L., C. Bollet, M. Abu Ghorrah, F. Grimont, and P. A. D. Grímont. 1992. DNA relatedness among the pathovar strains of Pseudomonas syringae subsp. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov. Int. J. Syst. Bacteriol. 42:606-612.
19. Grimont, P. A. D., M. Y. Popoff, F. Grimont, C. Coynault, and M. Lemelin. 1980. Reproductibility and correlation study of three deoxyribonucleic acid hybridization procedures. Curr. Microbiol. 4:325-330.
20. Guillot, E., and H. Leclerc. 1993. Bacterial flora in natural mineral waters: characterization by ribosomal ribonucleic acid gene restriction patterns. Syst. Appl. Microbiol. 16:483-493.
21. Guillot, E., and H. Leclerc. 1993. Biological specificity of bottled natural mineral waters: characterization by ribosomal ribonucleic acid gene restriction patterns. J. Appl. Bacteriol. 75:292-298.
22. Hoeniger, J. F. M. 1965. Development of flagella by Proteus mirabilis. J. Gen. Microbiol. 40:29-33.
23. Jessen, O. 1965. Pseudomonas aeruginosa and other green fluorescent pseudomonads. A taxonomic study, p. 1-244. Munksgaard, Copenhagen.
24. Johnson, J. L., and N. J. Palleroni. 1989. Deoxyribonucleic acid similarities among Pseudomonas species. Int. J. Syst. Bacteriol. 39:230-235.
25. Machtelinckx, P. 1975. Etude bactériologique sur les germes totaux et leur évolution dans les eaux minérales naturelles. Centre Belge d'Etude et de Documentation des Eaux. Tribune de l'Eau 384:406-409.
26. Marmur, J. 1961. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3:208-218.
27. Marmur, J., and P. Doty. 1962, Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5:109-118.
28. Masson, A., and R. Michel. 1978. Bactériologie des eaux minérales: influence du PVC sur la croissance de Pseudomonas aeruginosa et Pseudomonas fluorescens. Ind. Alim. Agric. 95:503-507.
29. Molin, G., and A. Ternström. 1982. Numerical taxonomy of the psychrotrophic pseudomonads. J. Gen. Microbiol. 128:1249-1264.
30. Molin, G., A. Ternström, and J. Ursing. 1986. Pseudomonas lundensis, a new bacterial species isolated from meat. Int. J. Syst. Bacteriol. 36:339-342.
31. Oger, C., J. F. Hernandez, J. M. Delattre, A. H. Delabroise, and S. Krupsky. 1987. Etude par épifluorescence de l'évolution de la microflore totale dans une eau minérale embouteillée. Water Res. 21:469-474.
32. AL (n.m. cons. opin. 5, jud. comm. 1952, 237), p. 141-199. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 1. The Williams and Wilkins Co., Baltimore.
33. Palleroni, N. J. 1992. Human- and animal-pathogenic pseudomonads, p. 3086-3103. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes. A handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, vol. 3. Springer-Verlag, New York.
34. Palleroni, N. J. 1992. Introduction to the family Pseudomonadaceae, p. 3071-3085. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes. A handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, vol. 3. Springer-Verlag, New York.
35. Palleroni, N. J., R. W. Ballard, R. Ralston, and M. Doudoroff. 1972. Deoxyribonucleic acid homologies among some Pseudomonas species. J. Bacteriol. 110:1-11.
36. Palleroni, N. J., and J. F. Bradbury. 1993. Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. Int. J. Syst. Bacteriol. 43:606-609.
37. Palleroni, N. J., M. Doudoroff, R. Y. Stanier, R. E. Solanes, and M. Mandel. 1970. Taxonomy of the aerobic pseudomonads: the properties of the Pseudomonas stutzeri group. J. Gen. Microbiol. 60:215-231.
38. Palleroni, N. J., R. Kunisawa, R. Contopoulou, and M. Doudoroff. 1973. Nucleic acid homologies in the genus Pseudomonas. Int. J. Syst. Bacteriol. 23:333-339.
39. Ralston-Barrett, E., N. J. Palleroni, and M. Doudoroff. 1976. Phenotypic characterization and deoxyribonucleic acid homologies of the "Pseudomonas alcaligenes" group. Int. J. Syst. Bacteriol. 26:421-426.
40. Reinhold-Hurek, B., T. Hurek, M. Gillis, B. Hoste, M. Vancanneyt, K. Kersters, and J. De Ley. 1993. Azoarcus gen nov., nitrogen-fixing proteobacteria associated with roots of Kallar Grass (Leplochloa fusca (L.) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov. Int. J. Syst. Bacteriol. 43:574-584.
41. Saint-Onge, A., F. Romeyer, P. Lebel, L. Masson, and R. Brousseau. 1992. Specificity of the Pseudomonas PAO1 lipoprotein I gene as a DNA probe and PCR target region within the Pseudomonadaceae. J. Gen. Microbiol. 138:733-741.
42. Schwaller, P., and W. Schmidt-Lorenz. 1980. Flore microbienne de quatre eaux minérales non gazéifiées et mises en bouteilles. I: Dénombrement de colonies, composition grossière de la flore et caractères du groupe des bactéries Gram-pigmentées en jaune. Zentralbl. Bakteriol. Hyg. Abt. 1 Orig. C 1:330-347.
43. Schwaller, P., and W. Schmidt-Lorenz. 1981. La flore microbienne de quatre eaux minérales non gazéifiées et mises en bouteilles. Deuxième communication: les Pseudomonas et autres bactéries à gram négatif - composition fine de la flore. Zentralbl. Bakteriol. Hyg. Abt. 1 Orig. C 2:179-196.
44. Segers, P., M. Vancanneyt, B. Pot, U. Torck, B. Hoste, D. Dewettinck, E. Falsen, K. Kersters, and P. De Vos. 1994. Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Büsing, Döll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. Int. J. Syst. Bacteriol. 44:499-510.
45. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
46. Stackebrandt, E., R. G. E. Murray, and H. G. Trüper. 1988. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives." Int. J. Syst. Bacteriol. 38:321-325.
47. Stanier, R. Y., N. J. Palleroni, and M. Doudoroff. 1966. The aerobic pseudomonads: a taxonomic study. J. Gen. Microbiol. 43:159-271.
48. Tamaoka, J., D. M. Ha, and K. Komagata. 1987. Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an emended description of the genus Comamonas. Int. J. Syst. Bacteriol. 37:52-59.
49. Van Der Kooij, D. 1990. Growth measurements with Pseudomonas aeruginosa, Aeromonas hydrophila and autochthonous bacteria to determine the biological stability of drinking water. Riv. Ital. Ig. 5-6:375-382.
50. Willems, A., J. Busse, M. Goor, B. Pot, E. Falsen, E. Jantzen, B. Hoste, M. Gillis, K. Kersters, G. Auling, and J. De Ley. 1989. Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol. 39:319-333.
51. Willems, A., P. De Vos, M. Gillis, and K. Kersters. 1992. Towards an improved classification of Pseudomonas sp. Soc. Appl. Bacteriol. Tech. Ser. 29:21-43.
52. Willems, A., E. Falsen, B. Pot, E. Jantzen, B. Hoste, P. Vandamme, M. Gillis, K. Kersters, and J. De Ley. 1990. Acidovorax, a new genus for Pseudomanas facilis, Pseudomonas delafieldii, EF group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb, nov., and Acidovorax temperans sp. nov. Int. J. Syst. Bacteriol. 40:384-398.
53. Yabuuchi, E., Y. Kosako, H. Oyaizu, I. Yano, H. Hotta, Y. Hashimoto, T. Ezaki, and M. Arakawa. 1992. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol. Immunol. 36:1251-1275.
54. Yabuuchi, E., Y. Kosako, H. Oyaizu, I. Yano, H. Hotta, and Y. Nishiuchi. 1995. Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol. Immunol. 39:897-904.
55. Yabuuchi, E., I. Yano, H. Oyaizu, Y. Hashimoto, T. Ezaki, and H. Yamamoto. 1990. Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol. Immunol. 34:99-119.