Unique DNA sequences of avian pathogenic Escherichia coli isolates as determined by genomic suppression subtractive hybridization

FEMS Microbiology Letters

Volumn 262, Issue 2, 2006, Pages 193-200

  Kariyawasam, Subhashinie ^a   Johnson, Timothy J ^a   Nolan, Lisa K ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Avian fecal Escherichia coli; Avian pathogenic Escherichia coli; Extraintestinal pathogenic Escherichia coli; Genomic suppression subtractive hybridization; Multiple locus sequence typing; Phylogenetic typing

Indexed keywords

ALDEHYDE REDUCTASE;

ARTICLE; AVIAN FECAL ESCHERICHIA COLI; AVIAN PATHOGENIC ESCHERICHIA COLI; BACTERIOPHAGE; BACTERIUM ISOLATE; BIRD; CHROMOSOMAL LOCALIZATION; DNA SEQUENCE; ESCHERICHIA COLI; GENE IDENTIFICATION; GENE REPRESSION; GENETIC CODE; HUMAN UROPATHOGENIC ESCHERICHIA COLI; IBEA GENE; IREA GENE; IRON RESPONSIVE ELEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; P PILI GENE; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STRAIN DIFFERENCE; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; TIA GENE; VIRULENCE;

ANIMALS; BACTEREMIA; CHICKENS; DNA, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYMERASE CHAIN REACTION; POULTRY DISEASES; SEQUENCE ANALYSIS, DNA; TURKEYS; URINARY TRACT INFECTIONS;

AVES; ESCHERICHIA COLI; TACCA LEONTOPETALOIDES;

EID: 33747655833     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00392.x     Document Type: Article

References (31)

1. Barnes HJ & Gross WB (1997) Colibacillosis. Diseases of Poultry, 10th edn (Calnek BW, Barnes HJ, Beard CW, McDougald LR & Saif YM, eds), pp. 131-141. Iowa State University Press, Ames, IA.
2. Brown PK & Curtiss R III (1996) Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain. Proc Natl Acad Sci USA 93: 11149-11154.
3. Clermont O, Bonacorsi S & Bingen E (2000) Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol 66: 4555-4558.
4. Dho-Moulin M & Fairbrother M (1999) Avian pathogenic Escherichia coli. Vet Res 30: 299-316.
5. Diatchenko L, Lau YF, Campbell AP et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA 93: 6025-6030.
6. Dorrell N, Hinchliffe SJ & Wren BW (2005) Comparative phylogenomics of pathogenic bacteria by microarray analysis. Curr Opin Microbiol 8: 620-626.
7. Fleckenstein JM, Kopecko DJ, Warren RL & Elsinghorst EA (1996) Molecular characterization of the tia invasion locus from enterotoxigenic Escherichia coli. Infect Immun 64: 2256-2265.
8. Germon P, Chen YH, He L, Blanco JE, Bree A, Schouler C, Huang SH & Moulin-Schouleur M (2005) IbeA, a virulence factor of avian pathogenic Escherichia coli. Microbiology 151: 1179-1186.
9. Johnson JR, Murray AC, Gajewski A, Sullivan M, Snippes P, Kuskowski MA & Smith KE (2003) Isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli from retail chicken products. Antimicrob Agents Chemother 47: 2161-2168.
10. Johnson JR, Kuskowski MA, Smith K, O'Bryan TT & Tatini S (2005) Antimicrobial-resistant and extraintestinal pathogenic Escherichia coli in retail foods. J Infect Dis 191: 1029-1031.
11. Johnson TJ, Siek KE, Johnson SJ & Nolan LK (2006) DNA Sequence of a ColV plasmid and prevalence of selected plasmid-encoded virulence genes among avian Escherichia coli strains. J Bacteriol 188: 745-758.
12. Kaper JB, Nataro JP & Mobley HL (2004) Pathogenic Escherichia coli. Nat Rev Microbiol 2: 123-140.
13. Kariyawasam S, Johnson TJ & Nolan LK (2006) pap operon of avian pathogenic Escherichia coli strain O1 is located on a novel pathogenicity island. Infect Immun 74: 744-749.
14. McPeake SJ, Smyth JA & Ball HJ (2005) Characterization of avian pathogenic Escherichia coli (APEC) associated with colisepticaemia compared to faecal isolates from healthy birds. Vet Microbiol 110: 245-253.
15. Melkerson-Watson LJ, Rode CK, Zhang L, Foxman B & Bloch CA (2000) Integrated genomic map from uropathogenic Escherichia coli J96. Infect Immun 68: 5933-5942.
16. Mokady D, Gophna U & Ron EZ (2005) Extensive gene diversity in septicemic Escherichia coli strains. J Clin Microbiol 43: 66-73.
17. Nolan LK, Wooley RE, Brown J, Spears KR, Dickerson HW & DekichM(1992) Comparison of a complement resistance test, a chicken embryo lethality test, and the chicken lethality assay for determining virulence of avian Escherichia coli. Avian Dis 36: 395-397.
18. Nolan LK, Giddings CW, Horne SM, Doetkott C, Gibbs PS, Wooley RE & Foley SL (2002) Complement resistance, as determined by viable count and flow cytometric methods, and its association with the presence of iss and the virulence of avian Escherichia coli. Avian Dis 46: 386-392.
19. Pourbakhsh SA, Boulianne M, Martineau-Doize B & Fairbrother JM (1997a) Virulence mechanisms of avian fimbriated Escherichia coli in experimentally inoculated chickens. Vet Microbiol 58: 195-213.
20. Pourbakhsh SA, Dho-Moulin M, Bree A, Desautels C, Martineau-Doize B & Fairbrother JM (1997b) Localization of the in vivo expression of P and F1 fimbriae in chickens experimentally inoculated with pathogenic Escherichia coli. Microb Pathog 22: 331-341.
21. Quinn FD, Newman GW & King CH (1997) In search of virulence factors of human disease. Trends Microbiol 5: 20-26.
22. Ramchandani M, Manges AR, DebRoy C, Smith SP, Johnson JR & Riley LW (2005) Possible animal origin of human-associated, multidrug-resistant, uropathogenic Escherichia coli. Clin Infect Dis 40: 251-257.
23. Rode CK, Melkerson-Watson LJ, Johnson AT & Bloch CA (1999) Type-specific contributions to chromosome size differences in Escherichia coli. Infect Immun 19: 230-236.
24. Rodriguez-Siek KE, Giddings CW, Doetkott C, Johnson TJ & Nolan LK (2005a) Characterizing the APEC pathotype. Vet Res 36: 241-256.
25. Rodriguez-Siek KE, Giddings CW, Doetkott C, Johnson TJ & Nolan LK (2005b) Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis. Microbiology 151: 2097-2110.
26. Russo TA, Carlino UB & Johnson JR (2001) Identification of a new iron-regulated virulence gene, ireA, in an extraintestinal pathogenic isolate of Escherichia coli. Infect Immun 69: 6209-6216.
27. Schouler C, Koffmann F, Amory C, Leroy-Setrin S & Moulin-Schouleur M (2004) Genomic subtraction for the identification of putative new virulence factors of an avian pathogenic Escherichia coli strain of O2 serogroup. Microbiology 150: 2973-2984.
28. Stocki SL, Babiuk LA, Rawlyk NA, Potter AA & Allan BJ (2002) Identification of genomic differences between Escherichia coli strains pathogenic for poultry and E. coli K-12 MG1655 using suppression subtractive hybridization analysis. Microb Pathog 33: 289-298.
29. Tartof SY, Solberg OD, Manges AR & Riley LW (2005) Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing. J Clin Microbiol 43: 5860-5864.
30. Wain J, House D, Pickard D, Dougan G & Frankel G (2001) Acquisition of virulence-associated factors by the enteric pathogens Escherichia coli and Salmonella enterica. Philos Trans Roy Soc London B Biol Sci 356: 1027-1034.
31. Weissman SJ, Chattopadhyay S, Aprikian P, Obata-Yasuoka M, Yarova-Yarovaya Y, Stapleton A, Ba-Thein W, Dykhuizen D, Johnson JR & Sokurenko EV (2006) Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli. Mol Microbiol 59: 975-988.