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Volumn 3, Issue 6, 2006, Pages 87-97

Analysis of single ion channel data incorporating time-interval omission and sampling

Author keywords

Aggregated Markov model; Hidden Markov model; Ion channel; Time interval omission

Indexed keywords

ION CHANNEL;

EID: 33747090363     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2005.0078     Document Type: Article
Times cited : (6)

References (31)
  • 1
    • 0000786004 scopus 로고
    • Aggregated Markov processes incorporating time interval omission
    • Ball, F. G. & Sansom, M. S. P. 1988 Aggregated Markov processes incorporating time interval omission. Adv. Appl. Prob. 20, 546-572.
    • (1988) Adv. Appl. Prob , vol.20 , pp. 546-572
    • Ball, F.G.1    Sansom, M.S.P.2
  • 2
    • 3142651055 scopus 로고
    • Numerical evaluation of observed sojourn time distributions for a single ion channel incorporating time interval omission
    • doi:10.1007/BF00143919
    • Ball, F. G. & Yeo, G. F. 1994 Numerical evaluation of observed sojourn time distributions for a single ion channel incorporating time interval omission. Statist. Comput. 4, 1-12. (doi:10.1007/BF00143919)
    • (1994) Statist. Comput , vol.4 , pp. 1-12
    • Ball, F.G.1    Yeo, G.F.2
  • 3
    • 0001710595 scopus 로고
    • Aggregated semi-Markov processes incorporating time interval omission
    • Ball, F., Milne, R. K. & Yeo, G. F. 1991 Aggregated semi-Markov processes incorporating time interval omission. Adv. Appl. Prob. 23, 772-797.
    • (1991) Adv. Appl. Prob , vol.23 , pp. 772-797
    • Ball, F.1    Milne, R.K.2    Yeo, G.F.3
  • 4
    • 21344479170 scopus 로고
    • On the exact distribution of observed open times in single ion channel models
    • Ball, F., Milne, R. K. & Yeo, G. F. 1993a On the exact distribution of observed open times in single ion channel models. J. Appl. Prob. 30, 529-537.
    • (1993) J. Appl. Prob , vol.30 , pp. 529-537
    • Ball, F.1    Milne, R.K.2    Yeo, G.F.3
  • 5
    • 0027464733 scopus 로고
    • Single ion channel models incorporation aggregation and time interval omission
    • Ball, F. G., Yeo, G. F., Milne, R. K., Edeson, R. E., Madsen, B. W. & Simson, M. P. 1993b Single ion channel models incorporation aggregation and time interval omission. Biophys. J. 64, 357-374.
    • (1993) Biophys. J , vol.64 , pp. 357-374
    • Ball, F.G.1    Yeo, G.F.2    Milne, R.K.3    Edeson, R.E.4    Madsen, B.W.5    Simson, M.P.6
  • 6
    • 0000353178 scopus 로고
    • A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains
    • Baum, L. E., Petrie, T., Soules, G. & Weiss, N. 1970 A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains. Ann. Math. Stat. 41, 164-171.
    • (1970) Ann. Math. Stat , vol.41 , pp. 164-171
    • Baum, L.E.1    Petrie, T.2    Soules, G.3    Weiss, N.4
  • 7
    • 0742305188 scopus 로고    scopus 로고
    • The activation mechanism of α1 homomeric glycine receptors
    • doi:10.1523/ JNEUROSCI.4420-03.2004
    • Beato, M., Groot-Kormelink, P. J., Colquhoun, D. & Sivilotti, L. G. 2004 The activation mechanism of α1 homomeric glycine receptors. J. Neurosci. 24, 895-906. (doi:10.1523/ JNEUROSCI.4420-03.2004)
    • (2004) J. Neurosci , vol.24 , pp. 895-906
    • Beato, M.1    Groot-Kormelink, P.J.2    Colquhoun, D.3    Sivilotti, L.G.4
  • 8
    • 10044248233 scopus 로고    scopus 로고
    • Singlechannel behavior of heteromeric α1β glycine receptors: An attempt to detect a conformational change before the channel opens
    • doi:10.1523/ JNEUROSCI.3424-04.2004
    • Burzomato, V., Beato, M., Groot-Kormelink, P.-J., Colquhoun, D. & Sivilotti, L. G. 2004 Singlechannel behavior of heteromeric α1β glycine receptors: an attempt to detect a conformational change before the channel opens. J. Neurosci. 24, 10 924-10 940. (doi:10.1523/ JNEUROSCI.3424-04.2004)
    • (2004) J. Neurosci , vol.24
    • Burzomato, V.1    Beato, M.2    Groot-Kormelink, P.-J.3    Colquhoun, D.4    Sivilotti, L.G.5
  • 9
    • 0020490146 scopus 로고
    • On the stochastic properties of bursts of single ion channel openings and of clusters of bursts
    • Colquhoun, D. & Hawkes, A. G. 1982 On the stochastic properties of bursts of single ion channel openings and of clusters of bursts. Phil. Trans. R. Soc. B 300, 1-59.
    • (1982) Phil. Trans. R. Soc. B , vol.300 , pp. 1-59
    • Colquhoun, D.1    Hawkes, A.G.2
  • 10
    • 0001774017 scopus 로고
    • Fitting and statistical analysis of single-channel records
    • ed. B. Sakmann & E. Neher, 1st edn, ch. 11, pp, New York: Plenum Press
    • Colquhoun, D. & Sigworth, F. J. 1983 Fitting and statistical analysis of single-channel records. In Single-channel recording (ed. B. Sakmann & E. Neher), 1st edn, ch. 11, pp. 191-263. New York: Plenum Press.
    • (1983) Single-channel recording , pp. 191-263
    • Colquhoun, D.1    Sigworth, F.J.2
  • 11
    • 3242781088 scopus 로고    scopus 로고
    • Joint distributions of apparent open and shut times of single-ion channels and maximum likelihood fitting of mechanisms
    • Colquhoun, D., Hawkes, A. G. & Srodzinski, K. 1996 Joint distributions of apparent open and shut times of single-ion channels and maximum likelihood fitting of mechanisms. Phil. Trans. R. Soc. A 354, 2555-2590.
    • (1996) Phil. Trans. R. Soc. A , vol.354 , pp. 2555-2590
    • Colquhoun, D.1    Hawkes, A.G.2    Srodzinski, K.3
  • 12
    • 0037444604 scopus 로고    scopus 로고
    • The quality of maximum likelihood estimates of ion channel rate constants
    • doi:10.1113/ jphysiol.2002.034165
    • Colquhoun, D., Hatton, C. J. & Hawkes, A. G. 2003 The quality of maximum likelihood estimates of ion channel rate constants. J. Physiol. 547, 699-728. (doi:10.1113/ jphysiol.2002.034165)
    • (2003) J. Physiol , vol.547 , pp. 699-728
    • Colquhoun, D.1    Hatton, C.J.2    Hawkes, A.G.3
  • 13
    • 0036612017 scopus 로고    scopus 로고
    • Hidden Markov processes
    • doi:10.1109/ TIT.2002.1003838
    • Ephraim, Y. & Merhav, N. 2002 Hidden Markov processes. IEEE Trans. Inform. Theory 48, 1518-1569. (doi:10.1109/ TIT.2002.1003838)
    • (2002) IEEE Trans. Inform. Theory , vol.48 , pp. 1518-1569
    • Ephraim, Y.1    Merhav, N.2
  • 14
    • 0035267229 scopus 로고    scopus 로고
    • Fast evaluation of the likelihood of an HMM: Ion channel currents with filtering and colored noise
    • doi:10.1109/78.905892
    • Fredkin, D. R. & Rice, J. A. 2001 Fast evaluation of the likelihood of an HMM: ion channel currents with filtering and colored noise. IEEE Trans. Signal Process. 49, 625-633. (doi:10.1109/78.905892)
    • (2001) IEEE Trans. Signal Process , vol.49 , pp. 625-633
    • Fredkin, D.R.1    Rice, J.A.2
  • 15
    • 0000410009 scopus 로고
    • Identification of aggregated Markovian models: Application to the nicotinic acetylcholine receptor
    • ed. L. M. Le Cam & R. A. Olshen, Monterey, CA: Wadsworth
    • Fredkin, D. R., Montai, M. & Rice, J. A. 1985 Identification of aggregated Markovian models: application to the nicotinic acetylcholine receptor. In Proc. of the Berkeley Conf. in Honor of Jerzy Neyman and Jack Kiefer (ed. L. M. Le Cam & R. A. Olshen), vol. 1, pp. 269-289. Monterey, CA: Wadsworth.
    • (1985) Proc. of the Berkeley Conf. in Honor of Jerzy Neyman and Jack Kiefer , vol.1 , pp. 269-289
    • Fredkin, D.R.1    Montai, M.2    Rice, J.A.3
  • 16
    • 0037444682 scopus 로고    scopus 로고
    • Properties of the human muscle nicotinic receptor, and of the slow-channel myasthenic syndrome mutant ∈L221F, inferred from maximum likelihood fits
    • Hatton, C. J., Shelley, C., Brydson, M., Beeson, D. & Colquhoun, D. 2003 Properties of the human muscle nicotinic receptor, and of the slow-channel myasthenic syndrome mutant ∈L221F, inferred from maximum likelihood fits. J. Physiol. 547, 729-760.
    • (2003) J. Physiol , vol.547 , pp. 729-760
    • Hatton, C.J.1    Shelley, C.2    Brydson, M.3    Beeson, D.4    Colquhoun, D.5
  • 17
    • 0000459587 scopus 로고
    • The distributions of the apparent open times and shut times in a single channel record when brief events cannot be detected
    • Hawkes, A. G., Jalali, A. & Colquhoun, D. 1990 The distributions of the apparent open times and shut times in a single channel record when brief events cannot be detected. Phil. Trans. R. Soc. A 332, 511-538.
    • (1990) Phil. Trans. R. Soc. A , vol.332 , pp. 511-538
    • Hawkes, A.G.1    Jalali, A.2    Colquhoun, D.3
  • 18
    • 0027128970 scopus 로고
    • Asymptotic distributions of apparent open times and shut times in a single channel record allowing for the omission of brief events
    • Hawkes, A. G., Jalali, A. & Colquhoun, D. 1992 Asymptotic distributions of apparent open times and shut times in a single channel record allowing for the omission of brief events. Phil. Trans. R. Soc. B 337, 383-404.
    • (1992) Phil. Trans. R. Soc. B , vol.337 , pp. 383-404
    • Hawkes, A.G.1    Jalali, A.2    Colquhoun, D.3
  • 19
    • 0002432817 scopus 로고
    • Generalised eigenproblems arising in aggregated Markov processes allowing for time interval omission
    • Jalali, A. & Hawkes, A. G. 1992 Generalised eigenproblems arising in aggregated Markov processes allowing for time interval omission. Adv. Appl. Prob. 24, 302-321.
    • (1992) Adv. Appl. Prob , vol.24 , pp. 302-321
    • Jalali, A.1    Hawkes, A.G.2
  • 23
    • 0033729178 scopus 로고    scopus 로고
    • A new approximate likelihood estimator for ARMA-filtered hidden Markov models
    • doi:10.1109/78.845913
    • Michalek, S., Wagner, M. & Timmer, J. 2000 A new approximate likelihood estimator for ARMA-filtered hidden Markov models. IEEE Trans. Signal Process. 48, 1537-1547. (doi:10.1109/78.845913)
    • (2000) IEEE Trans. Signal Process , vol.48 , pp. 1537-1547
    • Michalek, S.1    Wagner, M.2    Timmer, J.3
  • 24
    • 1542285356 scopus 로고    scopus 로고
    • Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling
    • Qin, F. 2004 Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling. Biophys. J. 86, 1488-1501.
    • (2004) Biophys. J , vol.86 , pp. 1488-1501
    • Qin, F.1
  • 25
    • 0033807604 scopus 로고    scopus 로고
    • Hidden Markov modeling for single channel kinetics with filtering and correlated noise
    • Qin, F., Auerbach, A. & Sachs, F. 2000 Hidden Markov modeling for single channel kinetics with filtering and correlated noise. Biophys. J. 79, 1928-1944.
    • (2000) Biophys. J , vol.79 , pp. 1928-1944
    • Qin, F.1    Auerbach, A.2    Sachs, F.3
  • 26
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • doi:10.1109/5.18626
    • Rabiner, L. R. 1989 A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE 77, 257-285. (doi:10.1109/5.18626)
    • (1989) Proc. IEEE , vol.77 , pp. 257-285
    • Rabiner, L.R.1
  • 27
    • 0027413275 scopus 로고
    • A nonlinear filter algorithm for the detection of jumps in patch-clamp data
    • doi:10.1007/BF00233050
    • Schultze, R. & Draber, S. 1993 A nonlinear filter algorithm for the detection of jumps in patch-clamp data. J. Membrane Biol. 132, 41-52. (doi:10.1007/BF00233050)
    • (1993) J. Membrane Biol , vol.132 , pp. 41-52
    • Schultze, R.1    Draber, S.2
  • 28
    • 0343455249 scopus 로고    scopus 로고
    • The Numerical Algorithms Group Ltd, Oxford, UK: The Numerical Algorithms Group Ltd
    • The Numerical Algorithms Group Ltd 1999 Fortran library mark. (1999), 19. Oxford, UK: The Numerical Algorithms Group Ltd.
    • (1999) Fortran library mark , pp. 19
  • 29
    • 0032124372 scopus 로고    scopus 로고
    • Identification of hidden Markov models for ion channel currents. Part II. State-dependent excess noise
    • doi:10.1109/78. 700964
    • Venkataramanan, L., Kuc, R. & Sigworth, F. 1998a Identification of hidden Markov models for ion channel currents. Part II. State-dependent excess noise. IEEE Trans. Signal Process. 46, 1916-1929. (doi:10.1109/78. 700964)
    • (1998) IEEE Trans. Signal Process , vol.46 , pp. 1916-1929
    • Venkataramanan, L.1    Kuc, R.2    Sigworth, F.3
  • 30
    • 0032122144 scopus 로고    scopus 로고
    • Identification of hidden Markov models for ion channel currents. Part I. Colored background noise
    • doi:10.1109/78. 700963
    • Venkataramanan, L., Walsh, J. L., Kuc, R. & Sigworth, F. 1998b Identification of hidden Markov models for ion channel currents. Part I. Colored background noise. IEEE Trans. Signal Process. 46, 1901-1915. (doi:10.1109/78. 700963)
    • (1998) IEEE Trans. Signal Process , vol.46 , pp. 1901-1915
    • Venkataramanan, L.1    Walsh, J.L.2    Kuc, R.3    Sigworth, F.4
  • 31
    • 0033881504 scopus 로고    scopus 로고
    • Identification of hidden Markov models for ion channel currents. Part III. Bandlimited, sampled data
    • doi:10.1109/78. 823965
    • Venkataramanan, L., Kuc, R. & Sigworth, F. J. 2000 Identification of hidden Markov models for ion channel currents. Part III. Bandlimited, sampled data. IEEE Trans. Signal Process. 48, 376-385. (doi:10.1109/78. 823965)
    • (2000) IEEE Trans. Signal Process , vol.48 , pp. 376-385
    • Venkataramanan, L.1    Kuc, R.2    Sigworth, F.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.