Immunogenetics Sequence Annotation: The strategy of imgt based on imgt-ontology

Studies in Health Technology and Informatics

Volumn 116, Issue , 2005, Pages 3-8

  Giudicellia, Véronique ^a   Chaume, Denys ^a   Jabado Michaloud, Joumana ^a   Lefranca, Marie Paule ^a,b  

^a INSTITUTE OF HUMAN GENETICS   (France)

^b INSTITUT UNIVERSITAIRE DE FRANCE   (France)

Author keywords

Antibody; Database; IMGT; Immunogenetics; Immunoglobulin; Immunoinformatics; Sequence annotation; T cell receptor

Indexed keywords

ANTIBODIES; CELL MEMBRANES; DATABASE SYSTEMS; DNA SEQUENCES; INFORMATION USE; KNOWLEDGE BASED SYSTEMS; NUCLEOTIDES; ONTOLOGY; T-CELLS;

IMGT; IMMUNOGENETICS; IMMUNOGLOBULIN; IMMUNOINFORMATICS; SEQUENCE ANNOTATION; T CELL RECEPTOR;

IMMUNOLOGY;

LYMPHOCYTE ANTIGEN RECEPTOR;

ANIMAL; BIOLOGY; GENETIC DATABASE; HUMAN; IMMUNOGENETICS; INTERNET; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; HUMANS; IMMUNOGENETICS; INTERNET; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR SEQUENCE DATA; RECEPTORS, ANTIGEN, T-CELL;

EID: 33746993368     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: None     Document Type: Conference Paper

References (15)

1. Lefranc M-P, Giudicelli V, Kaas Q, Duprat E, Jabado-Michaloud J, Scaviner D, Ginestoux C, Clément O, Chaume D, Lefranc G. IMGT, the international ImMunoGeneTics information system®. Nucleic Acids Res 2005: 33: D593-D597.
2. Lefranc M-P, Clement O., Kaas Q., Duprat E., Chastellan P., Coelho I., Combres K., Ginestoux C., Giudicelli V., Chaume D. and Lefranc G. IMGT-Choreography for Immunogenetics and Immunoinformatics. In Silico Biol. 2005: 5: 0006 http://www.bioinfo.de/isb/2004/05/0006/.
3. Giudicelli V. and Lefranc M-P. Ontology for Immunogenetics: The IMGT-ONTOLOGY. Bioinformatics 1999: 12: 1047-1054.
4. Lefranc M-P and Lefranc G. The Immunoglobulin FactsBook. Academic Press, London, UK, 458 pages, 2001.
5. Lefranc M-P and Lefranc G. The T cell receptor FactsBook. Academic Press, London, UK, 398 pages, 2001.
6. Giudicelli V, Chaume D, Lefranc M-P. IMGT/GENE-DB: A comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res 2005: 33: D256-D261.
7. Lefranc M-P, Giudicelli V, Ginestoux C, Bosc N, Folch G, Guiraudou D, Jabado-Michaloud J, Magris S, Scaviner D, Thouvenin V, Combres K, Girod D, Jeanjean S, Protat C, Yousfi Monod M, Duprat E, Kaas Q, Pommié C, Chaume D and Lefranc G. IMGT-ONTOLOGY for Immunogenetics and Immunoinformatics. In Silico Biol, 2004: 4: 17-29.
8. Giudicelli V, Protat C and Lefranc M-P. The IMGT strategy for the Automatic annotation of IG and TR cDNA sequences: IMGT/Automat. ECCB'2003, EuropeanConference on Computational Biology. Ed DISC/Spid DKB-31, 2003; pp103-104.
9. Giudicelli V, Chaume D and Lefranc M-P. IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. Nucleic Acids Res. 2004: 32: W435-W440.
10. Yousfi Monod M, Giudicelli V, Chaume D and Lefranc M-P. IMGT/JunctionAnalysis: The first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONs. Bioinformatics 2004: 20: I379-I385.
11. Kanz C, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 2005: 33: D29-D33.
12. Tateno Y, Saitou N, Okubo K, Sugawara H and Gojobori T. DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res. 2005: 33: D25-D28.
13. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J and Wheeler DL. GenBank. Nucleic Acids Res., 2005: 33: D34-D38.
14. Wain HM, Bruford EA, Lovering RC, Lush MJ, Wright MW and Povey S. Guidelines for human gene nomenclature. Genomics, 2002: 79: 464-470.
15. Lefranc M-P. IMGT® databases, web resources and tools for immunoglobulin and T cell receptor sequence analysis, http://imgt.cines.fr. Leukemia, 2003: 17: 260-266.